1WDX | pdb_00001wdx

Yeast BBC1 SH3 domain, triclinic crystal form

• PDB DOI: https://doi.org/10.2210/pdb1WDX/pdb

• Classification: CONTRACTILE PROTEIN
• Organism(s): Saccharomyces cerevisiae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-05-19 Released: 2005-05-31 
• Deposition Author(s): Wilmanns, M., Consani Textor, L., Kursula, P., Kursula, I., Lehmann, F., Song, Y.H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.326 (Depositor), 0.330 (DCC) 
• R-Value Work: 
  0.263 (Depositor), 0.270 (DCC) 
• R-Value Observed: 
  0.266 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of Yeast BBC1 SH3 domain, triclinic crystal form

Wilmanns, M., Consani Textor, L., Kursula, P., Kursula, I., Lehmann, F., Song, Y.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 4 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 31.51 kDa 
• Atom Count: 2,084 
• Modeled Residue Count: 252 
• Deposited Residue Count: 276 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Myosin tail region-interacting protein MTI1	A, B, C, D	69	Saccharomyces cerevisiae	Mutation(s): 0
UniProt
Find proteins for P47068 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P47068  Go to UniProtKB:  P47068

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.326 (Depositor), 0.330 (DCC) 
• R-Value Work:  0.263 (Depositor), 0.270 (DCC) 
• R-Value Observed: 0.266 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.73	α = 89.83
b = 44.77	β = 83.37
c = 51.12	γ = 85.41

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-05-31 
Deposition Author(s): Wilmanns, M., Consani Textor, L., Kursula, P., Kursula, I., Lehmann, F., Song, Y.H.

Revision History  

• Version 1.0: 2005-05-31
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-03-13
  Changes: Data collection, Database references, Refinement description
• Version 1.4: 2024-04-03
  Changes: Refinement description