2E12 | pdb_00002e12

The crystal structure of XC5848 from Xanthomonas campestris adopting a novel variant of Sm-like motif

• PDB DOI: https://doi.org/10.2210/pdb2E12/pdb

• Classification: TRANSLATION
• Organism(s): Xanthomonas campestris pv. campestris
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-10-17 Released: 2007-10-30 
• Deposition Author(s): Chin, K.-H., Ruan, S.-K., Wang, A.H.-J., Chou, S.-H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 
  0.280 (Depositor) 
• R-Value Work: 
  0.220 (Depositor) 
• R-Value Observed: 
  0.240 (Depositor) 

Literature

XC5848, an ORFan protein from Xanthomonas campestris, adopts a novel variant of Sm-like motif

Chin, K.-H., Ruan, S.-K., Wang, A.H.-J., Chou, S.-H.

(2007) Proteins 68: 1006-1010

• PubMed: 17546661 
• DOI: https://doi.org/10.1002/prot.21375
• Primary Citation of Related Structures:  
  2E12

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Organizational Affiliation: 

Institute of Biochemistry, National Chung-Hsing University, Taichung, 40227, Taiwan, Republic of China.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 23.14 kDa 
• Atom Count: 1,634 
• Modelled Residue Count: 186 
• Deposited Residue Count: 202 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein XCC3642	A, B	101	Xanthomonas campestris pv. campestris	Mutation(s): 0
UniProt
Find proteins for Q8P4R5 (Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)) Explore Q8P4R5  Go to UniProtKB:  Q8P4R5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free:  0.280 (Depositor) 
• R-Value Work:  0.220 (Depositor) 
• R-Value Observed: 0.240 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.942	α = 90
b = 51.699	β = 90
c = 82.12	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
AMoRE	phasing
CNS	refinement
DENZO	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-10-30 
Deposition Author(s): Chin, K.-H., Ruan, S.-K., Wang, A.H.-J., Chou, S.-H.

Revision History  

• Version 1.0: 2007-10-30
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2019-11-06
  Changes: Data collection
• Version 1.3: 2024-03-13
  Changes: Data collection, Database references