3AT0 | pdb_00003at0

Structural and biochemical characterization of ClfB:ligand interactions

PDB DOI: https://doi.org/10.2210/pdb3AT0/pdb

Classification: CELL ADHESION/BLOOD CLOTTING
Organism(s): Staphylococcus aureus subsp. aureus N315, Homo sapiens
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2010-12-23 Released: 2011-05-04
Deposition Author(s): Ganesh, V.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.207 (Depositor), 0.210 (DCC)
R-Value Work:
0.178 (Depositor), 0.180 (DCC)
R-Value Observed:
0.179 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Structural and biochemical characterization of ClfB:ligand interactions

Ganesh, V.K., Barbu, E.M., Deivanayagam, C.C.S., Le, B., Anderson, A., Matsuka, Y., Lin, S.L., Foster, T.J., Narayana, S.V.L., Hook, M.

To be published.

Macromolecule Content

Total Structure Weight: 38.97 kDa
Atom Count: 2,751
Modelled Residue Count: 329
Deposited Residue Count: 354
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Clumping factor B	A	338	Staphylococcus aureus subsp. aureus N315	Mutation(s): 1 Gene Names: clfB, SA2423
UniProt
Find proteins for Q7A382 (Staphylococcus aureus (strain N315)) Explore Q7A382 Go to UniProtKB: Q7A382
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q7A382
Sequence Annotations Expand
Reference Sequence LOADING

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
C-terminal alpha chain peptide	B	16	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P02671 (Homo sapiens) Explore P02671 Go to UniProtKB: P02671
PHAROS: P02671 GTEx: ENSG00000171560
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P02671
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.207 (Depositor), 0.210 (DCC)
R-Value Work: 0.178 (Depositor), 0.180 (DCC)
R-Value Observed: 0.179 (Depositor)

Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.238	α = 90
b = 86.238	β = 90
c = 83.864	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
CrystalClear	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-05-04

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-05-04
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-03-13
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.