3OOP | pdb_00003oop

The structure of a protein with unknown function from Listeria innocua Clip11262

PDB DOI: https://doi.org/10.2210/pdb3OOP/pdb

Classification: structural genomics, unknown function
Organism(s): Listeria innocua Clip11262
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-08-31 Released: 2010-09-22
Deposition Author(s): Fan, Y., Li, H., Zhou, Y., Gu, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free:
0.236 (Depositor), 0.235 (DCC)
R-Value Work:
0.210 (Depositor), 0.210 (DCC)
R-Value Observed:
0.212 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

The structure of a protein with unknown function from Listeria innocua Clip11262

Fan, Y., Li, H., Zhou, Y., Gu, M., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 16.62 kDa
Atom Count: 1,319
Modelled Residue Count: 139
Deposited Residue Count: 143
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lin2960 protein	A	143	Listeria innocua Clip11262	Mutation(s): 0 Gene Names: lin2960
UniProt
Find proteins for Q926T1 (Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)) Explore Q926T1 Go to UniProtKB: Q926T1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q926T1
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free: 0.236 (Depositor), 0.235 (DCC)
R-Value Work: 0.210 (Depositor), 0.210 (DCC)
R-Value Observed: 0.212 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.687	α = 90
b = 77.834	β = 113.36
c = 33.065	γ = 90

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELXD	phasing
MLPHARE	phasing
ARP	model building
WARP	model building
HKL-3000	phasing
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2010-09-22

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2010-09-22
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-11-08
Changes: Refinement description
Version 1.3: 2024-11-27
Changes: Data collection, Database references, Derived calculations, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.