3Q6C | pdb_00003q6c

X-ray crystal structure of duf2500 (pf10694) from klebsiella pneumoniae, northeast structural genomics consortium target kpr96

PDB DOI: https://doi.org/10.2210/pdb3Q6C/pdb

Classification: Structure Genomics, unknown function
Organism(s): Klebsiella variicola At-22
Mutation(s): No

Deposited: 2010-12-31 Released: 2011-08-10
Deposition Author(s): Seetharaman, J., Su, M., Wang, D., Ciccosanti, C., Sahdev, S., Nair, R., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free:
0.284 (Depositor), 0.293 (DCC)
R-Value Work:
0.225 (Depositor), 0.287 (DCC)
R-Value Observed:
0.242 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

X-ray crystal structure of duf2500 (pf10694) from klebsiella pneumoniae, northeast structural genomics consortium target kpr96

Seetharaman, J., Su, M., Wang, D., Ciccosanti, C., Sahdev, S., Nair, R., Rost, B., Acton, T.B., Xiao, R., Everett, J.K., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published.

Macromolecule Content

Total Structure Weight: 151.61 kDa
Atom Count: 8,847
Modelled Residue Count: 1,067
Deposited Residue Count: 1,328
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
probable receptor YhhM	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	83	Klebsiella variicola At-22	Mutation(s): 0 Gene Names: Kvar_0268
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.284 (Depositor), 0.293 (DCC)
R-Value Work: 0.225 (Depositor), 0.287 (DCC)
R-Value Observed: 0.242 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 58.714	α = 90
b = 93.613	β = 97.31
c = 137.34	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2011-08-10

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2011-08-10
Type: Initial release
Version 1.1: 2012-02-22
Changes: Structure summary
Version 1.2: 2017-10-25
Changes: Author supporting evidence
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary