4ORD | pdb_00004ord

Crystal Structure of Zebra Fish Thioesterase Superfamily Member 2

• PDB DOI: https://doi.org/10.2210/pdb4ORD/pdb

• Classification: HYDROLASE
• Organism(s): Danio rerio
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2014-02-11 Released: 2015-02-11 
• Deposition Author(s): Yu, S.S., Li, H., Gao, F., Xu, H., Gong, W.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.225 (Depositor), 0.230 (DCC) 
• R-Value Work: 
  0.193 (Depositor), 0.200 (DCC) 
• R-Value Observed: 
  0.195 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure and Potential Physiological Role of Zebra Fish Thioesterase Superfamily Member 2 (fTHEM2)

Yu, S.S., Li, H., Gao, F., Wang, Y., Miao, L.Y., Zhang, J., Xu, H., Gong, W.M.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 64.61 kDa 
• Atom Count: 4,463 
• Modeled Residue Count: 552 
• Deposited Residue Count: 596 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioesterase Superfamily Member 2	A, B, C, D	149	Danio rerio	Mutation(s): 0  Gene Names: acot13 EC: 3.1.2
UniProt
Find proteins for F6P1Y9 (Danio rerio) Explore F6P1Y9  Go to UniProtKB:  F6P1Y9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.225 (Depositor), 0.230 (DCC) 
• R-Value Work:  0.193 (Depositor), 0.200 (DCC) 
• R-Value Observed: 0.195 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.064	α = 90
b = 74.35	β = 93.72
c = 96.59	γ = 90

Software Package:

Software Name	Purpose
MAR345dtb	data collection
MOLREP	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-02-11 
Deposition Author(s): Yu, S.S., Li, H., Gao, F., Xu, H., Gong, W.M.

Revision History  

• Version 1.0: 2015-02-11
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description