Download MendeleyStructure of the VIM-2 Metallo-beta-Lactamase in Complex with a Bisthiazolidine Inhibitor
Spencer, J.To be published.
4UA4
Structure of the VIM-2 Metallo-beta-Lactamase in Complex with a Bisthiazolidine Inhibitor
- PDB DOI: https://doi.org/10.2210/pdb4UA4/pdb
- Classification: HYDROLASE
- Organism(s): Pseudomonas aeruginosa
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2014-08-08 Released: 2014-09-17
- Funding Organization(s): National Institutes of Health
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.164
- R-Value Work: 0.144
- R-Value Observed: 0.145
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-lactamase class B VIM-2 | 242 | Pseudomonas aeruginosa | Mutation(s): 0 EC: 3.5.2.6 |  | |
UniProt | |||||
Find proteins for Q9K2N0 (Pseudomonas aeruginosa) Explore Q9K2N0 Go to UniProtKB: Q9K2N0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9K2N0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3C7 Query on 3C7 | F [auth A], G [auth A], H [auth B] | (3R,5R,7aS)-5-(sulfanylmethyl)tetrahydro[1,3]thiazolo[4,3-b][1,3]thiazole-3-carboxylic acid C7 H11 N O2 S3 ZTWVMVSSSBGFHH-JKUQZMGJSA-N |  | ||
| GOL Query on GOL | E [auth A], K [auth B], L [auth B], M [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A], D [auth A], I [auth B], J [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.164
- R-Value Work: 0.144
- R-Value Observed: 0.145
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.888 | α = 90 |
| b = 61.404 | β = 100.87 |
| c = 68.918 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2014-09-17 Deposition Author(s): Spencer, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health | United States | R01AI100560 |
Revision History (Full details and data files)
- Version 1.0: 2014-09-17
Type: Initial release - Version 1.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Refinement description
