Download MendeleyStepping Back and Forward on Sumo Folding Evolution
Grana-Montes, R., Gallego, P., Espargaro, A., Castillo, V., Torrent, J., Lange, R., Reverter, D., Papaleo, E., Lindorff-Larsend, K., Ventura, S.To be published.
5AEK | pdb_00005aek
Crystal structure of the human SENP2 C548S in complex with the human SUMO1 K48M F66W
- PDB DOI: https://doi.org/10.2210/pdb5AEK/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2014-12-23 Released: 2016-01-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.326 (Depositor), 0.320 (DCC)
- R-Value Work: 0.257 (Depositor), 0.250 (DCC)
- R-Value Observed: 0.259 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SENTRIN-SPECIFIC PROTEASE 2 | 224 | Homo sapiens | Mutation(s): 1 EC: 3.4.22.68 (PDB Primary Data), 3.4.22 (UniProt) |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9HC62 (Homo sapiens) Explore Q9HC62 Go to UniProtKB: Q9HC62 | |||||
PHAROS: Q9HC62 GTEx: ENSG00000163904 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9HC62 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SMALL UBIQUITIN-RELATED MODIFIER 1 | 78 | Homo sapiens | Mutation(s): 2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P63165 (Homo sapiens) Explore P63165 Go to UniProtKB: P63165 | |||||
PHAROS: P63165 GTEx: ENSG00000116030 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P63165 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.00 Å
- R-Value Free: 0.326 (Depositor), 0.320 (DCC)
- R-Value Work: 0.257 (Depositor), 0.250 (DCC)
- R-Value Observed: 0.259 (Depositor)
Space Group: P 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 113.721 | α = 90 |
| b = 119.319 | β = 89.67 |
| c = 199.84 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XPS | data reduction |
| CCP4I | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2016-01-20 Deposition Author(s): Gallego, P., Grana-Montes, R., Espargaro, A., Castillo, V., Torrent, J., Lange, R., Papaleo, E., Lindorff-Larsend, K., Ventura, S., Reverter, D.
Revision History (Full details and data files)
- Version 1.0: 2016-01-20
Type: Initial release - Version 1.1: 2019-05-22
Changes: Data collection, Experimental preparation, Other - Version 1.2: 2024-01-10
Changes: Data collection, Database references, Other, Refinement description
