5DBQ | pdb_00005dbq

Crystal structure of insect thioredoxin at 1.95 Angstroms

• PDB DOI: https://doi.org/10.2210/pdb5DBQ/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Anticarsia gemmatalis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-08-21 Released: 2016-08-24 
• Deposition Author(s): Klinke, S., Tejedor, M.D., Cerutti, M.L., Giacometti, R., Otero, L.H., Goldbaum, F.A., Zavala, J.A., Wolosiuk, R.A., Pagano, E.A.
• Funding Organization(s): ANPCyT

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free: 
  0.250 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.210 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.212 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of insect thioredoxin at 1.95 Angstroms

Klinke, S., Tejedor, M.D., Cerutti, M.L., Giacometti, R., Otero, L.H., Goldbaum, F.A., Zavala, J.A., Wolosiuk, R.A., Pagano, E.A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 24.28 kDa 
• Atom Count: 1,836 
• Modelled Residue Count: 212 
• Deposited Residue Count: 218 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Thioredoxin	A, B	109	Anticarsia gemmatalis	Mutation(s): 0
UniProt
Find proteins for A0A0Y0BMD0 (Anticarsia gemmatalis) Explore A0A0Y0BMD0  Go to UniProtKB:  A0A0Y0BMD0

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.95 Å
• R-Value Free:  0.250 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.210 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.212 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 107.71	α = 90
b = 28.98	β = 128.32
c = 79.86	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
PROTEUM PLUS	data collection
XDS	data scaling
MrBUMP	phasing
MOLREP	phasing
PHASER	phasing
Coot	model building
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2016-08-24 
Deposition Author(s): Klinke, S., Tejedor, M.D., Cerutti, M.L., Giacometti, R., Otero, L.H., Goldbaum, F.A., Zavala, J.A., Wolosiuk, R.A., Pagano, E.A.

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Funding Organization	Location	Grant Number
ANPCyT	Argentina	PICT 2011-2115
ANPCyT	Argentina	PPL2-03

Revision History  

• Version 1.0: 2016-08-24
  Type: Initial release
  
• Version 1.1: 2017-09-27
  Changes: Data collection, Derived calculations, Refinement description
• Version 1.2: 2023-09-27
  Changes: Data collection, Database references, Refinement description
• Version 1.3: 2024-11-06
  Changes: Structure summary