6IBE

The FERM domain of Human EPB41L3

• PDB DOI: https://doi.org/10.2210/pdb6IBE/pdb

• Classification: CELL ADHESION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-11-29 Released: 2018-12-19 
• Deposition Author(s): Bradshaw, W.J., Katis, V.L., Newman, J.A., Fernandez-Cid, A., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.
• Funding Organization(s): National Institutes of Health/National Institute on Aging (NIH/NIA)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 0.200 
• R-Value Work: 0.154 
• R-Value Observed: 0.156 

Starting Model: experimental

Literature

The FERM domain of Human EPB41L3

Bradshaw, W.J., Katis, V.L., Newman, J.A., Fernandez-Cid, A., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 33.96 kDa 
• Atom Count: 2,714 
• Modelled Residue Count: 284 
• Deposited Residue Count: 286 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Band 4.1-like protein 3	A	286	Homo sapiens	Mutation(s): 0  Gene Names: EPB41L3, DAL1, KIAA0987
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y2J2 (Homo sapiens) Explore Q9Y2J2  Go to UniProtKB:  Q9Y2J2
PHAROS:  Q9Y2J2 GTEx:  ENSG00000082397

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MES	H [auth A]	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C6 H13 N O4 S SXGZJKUKBWWHRA-UHFFFAOYSA-N
EDO	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.45 Å
• R-Value Free: 0.200 
• R-Value Work: 0.154 
• R-Value Observed: 0.156 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.915	α = 90
b = 78.687	β = 90
c = 98.981	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-12-19 
Deposition Author(s): Bradshaw, W.J., Katis, V.L., Newman, J.A., Fernandez-Cid, A., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

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Funding Organization	Location	Grant Number
National Institutes of Health/National Institute on Aging (NIH/NIA)	United States	--

Revision History  

• Version 1.0: 2018-12-19
  Type: Initial release
  
• Version 1.1: 2022-03-30
  Changes: Author supporting evidence, Database references
• Version 1.2: 2024-01-24
  Changes: Data collection, Refinement description