6RO9 | pdb_00006ro9

Human spectrin SH3 domain D48G, E7V, K60V

• PDB DOI: https://doi.org/10.2210/pdb6RO9/pdb

• Classification: PROTEIN BINDING
• Organism(s): Mola mola
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2019-05-10 Released: 2020-06-03 
• Deposition Author(s): Reverter, D., Navarro, S., Ventura, S.
• Funding Organization(s): Spanish Ministry of Economy and Competitiveness

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.81 Å
• R-Value Free: 
  0.256 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.203 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.206 (Depositor) 

Starting Model: experimental

Literature

Human spectrin SH3 domain D48G, E7V, K60V

Reverter, D., Navarro, S., Ventura, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content 

• Total Structure Weight: 7 kDa 
• Atom Count: 488 
• Modeled Residue Count: 56 
• Deposited Residue Count: 61 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spectrin alpha, non-erythrocytic 1	A	61	Mola mola	Mutation(s): 3
UniProt
Find proteins for A0A3Q3W9R3 (Mola mola) Explore A0A3Q3W9R3  Go to UniProtKB:  A0A3Q3W9R3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.81 Å
• R-Value Free:  0.256 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.203 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.206 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 32.906	α = 90
b = 41.819	β = 90
c = 48.798	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2020-06-03 
Deposition Author(s): Reverter, D., Navarro, S., Ventura, S.

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Funding Organization	Location	Grant Number
Spanish Ministry of Economy and Competitiveness	Spain	--

Revision History  

• Version 1.0: 2020-06-03
  Type: Initial release
  
• Version 1.1: 2024-01-24
  Changes: Data collection, Database references, Refinement description