7B8U
Notum-Fragment 201
- PDB DOI: https://doi.org/10.2210/pdb7B8U/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Homo sapiens
- Mutation(s): Yes 
- Deposited: 2020-12-13 Released: 2022-01-12 
- Funding Organization(s): Cancer Research UK
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.54 Å
- R-Value Free: 0.232 
- R-Value Work: 0.209 
- R-Value Observed: 0.210 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Palmitoleoyl-protein carboxylesterase NOTUM | 383 | Homo sapiens | Mutation(s): 1  Gene Names: NOTUM, OK/SW-CL.30 EC: 3.1.1.98 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6P988 (Homo sapiens) Explore Q6P988  Go to UniProtKB:  Q6P988 | |||||
PHAROS:  Q6P988 GTEx:  ENSG00000185269  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q6P988 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | C [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
RUY (Subject of Investigation/LOI) Query on RUY | I [auth A] | 4-(piperidin-1-yl)-1,2,5-oxadiazol-3-amine C7 H12 N4 O RVSIGDHRHURXCQ-UHFFFAOYSA-N | |||
SO4 Query on SO4 | B [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.54 Å
- R-Value Free: 0.232 
- R-Value Work: 0.209 
- R-Value Observed: 0.210 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 60.4 | α = 90 |
b = 72.758 | β = 90 |
c = 79.087 | γ = 90 |
Software Name | Purpose |
---|---|
xia2 | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
xia2 | data reduction |
MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-01-12  Deposition Author(s): Zhao, Y., Jonees, E.Y.
Funding Organization | Location | Grant Number |
---|---|---|
Cancer Research UK | United Kingdom | C375/A17721 |
Revision History (Full details and data files)
- Version 1.0: 2022-01-12
Type: Initial release - Version 1.1: 2022-07-27
Changes: Database references - Version 1.2: 2024-01-31
Changes: Data collection, Refinement description