A crystallography-based study of fragment extensions into the 14-3-3 binding groove
Centorrino, F., Wu, Q., Cossar, P., Brunsveld, L., Ottmann, C.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
14-3-3 protein sigma | 253 | Homo sapiens | Mutation(s): 0  Gene Names: SFN, HME1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P31947 (Homo sapiens) Explore P31947  Go to UniProtKB:  P31947 | |||||
PHAROS:  P31947 GTEx:  ENSG00000175793  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P31947 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cyclin-dependent kinase inhibitor 1B | B [auth P] | 12 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P46527 (Homo sapiens) Explore P46527  Go to UniProtKB:  P46527 | |||||
PHAROS:  P46527 GTEx:  ENSG00000111276  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P46527 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
0B7 (Subject of Investigation/LOI) Query on 0B7 | C [auth A], G [auth A] | ~{N}-[(5-carbamimidoyl-3-phenyl-thiophen-2-yl)methyl]-1~{H}-indole-6-carboxamide C21 H18 N4 O S AWDSOCIOIXYPGZ-UHFFFAOYSA-N | |||
CL Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
MG Query on MG | D [auth A], F [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSO Query on CSO | A | L-PEPTIDE LINKING | C3 H7 N O3 S | CYS | |
TPO Query on TPO | B [auth P] | L-PEPTIDE LINKING | C4 H10 N O6 P | THR |
Length ( Å ) | Angle ( ˚ ) |
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a = 82.428 | α = 90 |
b = 111.483 | β = 90 |
c = 62.261 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
DIALS | data reduction |
Aimless | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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H2020 Marie Curie Actions of the European Commission | European Union | 675179 |