7YCX

The structure of INTAC-PEC complex

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.18 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history. 


Literature

Structural basis of INTAC-regulated transcription.

Zheng, H., Jin, Q., Wang, X., Qi, Y., Liu, W., Ren, Y., Zhao, D., Xavier Chen, F., Cheng, J., Chen, X., Xu, Y.

(2023) Protein Cell 


Macromolecules

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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 1A2,190Homo sapiensMutation(s): 0 
Gene Names: INTS1, KIAA1440, UNQ1821/PRO3434
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 2B1,204Homo sapiensMutation(s): 0 
Gene Names: INTS2, KIAA1287
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 4C [auth D]963Homo sapiensMutation(s): 0 
Gene Names: INTS4, MSTP093
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Entity ID: 4
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 5D [auth E]1,019Homo sapiensMutation(s): 0 
Gene Names: INTS5, KIAA1698
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Entity ID: 5
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 6E [auth F]887Homo sapiensMutation(s): 0 
Gene Names: INTS6, DBI1, DDX26, DDX26A
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Entity ID: 6
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 7F [auth G]962Homo sapiensMutation(s): 0 
Gene Names: INTS7, C1orf73
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Entity ID: 7
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 8G [auth H]995Homo sapiensMutation(s): 0 
Gene Names: INTS8, C8orf52
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Entity ID: 8
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 9H [auth I]658Homo sapiensMutation(s): 0 
Gene Names: INTS9, RC74
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Entity ID: 9
MoleculeChainsSequence LengthOrganismDetailsImage
Integrator complex subunit 11I [auth K]600Homo sapiensMutation(s): 0 
Gene Names: INTS11, CPSF3L, RC68
EC: 3.1.27
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Entity ID: 10
MoleculeChainsSequence LengthOrganismDetailsImage
Unknown2J [auth M]17Homo sapiensMutation(s): 0 
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Entity ID: 11
MoleculeChainsSequence LengthOrganismDetailsImage
Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoformK [auth P]589Homo sapiensMutation(s): 0 
Gene Names: PPP2R1A
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Entity ID: 12
MoleculeChainsSequence LengthOrganismDetailsImage
Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoformL [auth Q]309Homo sapiensMutation(s): 0 
Gene Names: PPP2CA
EC: 3.1.3.16
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Entity ID: 13
MoleculeChainsSequence LengthOrganismDetailsImage
UnknownM [auth U]27Homo sapiensMutation(s): 0 
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Entity ID: 14
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase II subunit RPB1,DNA-directed RNA polymerase II subunit RPB1, CTD1, CTD2, CTD3, CTD4N [auth 1]1,970Homo sapiensMutation(s): 0 
Gene Names: POLR2A, POLR2
EC: 2.7.7.6 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
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Entity ID: 15
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase subunit betaO [auth 2]1,174Sus scrofaMutation(s): 0 
EC: 2.7.7.6
UniProt
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Entity ID: 16
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase II subunit RPB3P [auth 3]271Sus scrofaMutation(s): 0 
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Find proteins for A0A481DF93 (Sus scrofa)
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Entity ID: 17
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase II subunit EQ [auth 4]210Sus scrofaMutation(s): 0 
Gene Names: POLR2E
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Find proteins for A0A4X1VTX4 (Sus scrofa)
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Entity ID: 18
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase II subunit FR [auth 5]127Sus scrofaMutation(s): 0 
Gene Names: POLR2F
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Find proteins for A0A4X1VEK9 (Sus scrofa)
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Entity ID: 19
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC3S [auth 6]150Sus scrofaMutation(s): 0 
Gene Names: POLR2H
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Find proteins for A0A4X1ULF2 (Sus scrofa)
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Entity ID: 20
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase II subunit RPB9T [auth 7]125Sus scrofaMutation(s): 0 
Gene Names: POLR2I
UniProt
Find proteins for P60899 (Sus scrofa)
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Entity ID: 21
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerases I, II, and III subunit RPABC5U [auth 8]67Sus scrofaMutation(s): 0 
UniProt
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Entity ID: 22
MoleculeChainsSequence LengthOrganismDetailsImage
RNA_pol_L_2 domain-containing proteinV [auth 9]117Sus scrofaMutation(s): 0 
Gene Names: POLR2J
UniProt
Find proteins for A0A4X1UK25 (Sus scrofa)
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Entity ID: 23
MoleculeChainsSequence LengthOrganismDetailsImage
RPB12W [auth a]58Sus scrofaMutation(s): 0 
Gene Names: POLR2K
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Find proteins for A0A4X1TRS6 (Sus scrofa)
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Entity ID: 27
MoleculeChainsSequence LengthOrganismDetailsImage
Negative elongation factor AAA [auth e]528Homo sapiensMutation(s): 0 
Gene Names: NELFA, WHSC2, P/OKcl.15
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Entity ID: 28
MoleculeChainsSequence LengthOrganismDetailsImage
Negative elongation factor BBA [auth f]580Homo sapiensMutation(s): 0 
Gene Names: NELFB, COBRA1, KIAA1182
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Entity ID: 29
MoleculeChainsSequence LengthOrganismDetailsImage
Negative elongation factor C/DCA [auth g]590Homo sapiensMutation(s): 0 
Gene Names: NELFCD, NELFD, TH1, TH1L, HSPC130
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Entity ID: 30
MoleculeChainsSequence LengthOrganismDetailsImage
Negative elongation factor EDA [auth h]380Homo sapiensMutation(s): 0 
Gene Names: NELFE, RD, RDBP
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Entity ID: 31
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription elongation factor SPT4EA [auth i]121Homo sapiensMutation(s): 0 
Gene Names: SUPT4H1, SPT4H, SUPT4H
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Entity ID: 32
MoleculeChainsSequence LengthOrganismDetailsImage
Transcription elongation factor SPT5FA [auth j]1,087Homo sapiensMutation(s): 0 
Gene Names: SUPT5H, SPT5, SPT5H
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Entity ID: 33
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase II subunit RPB7GA [auth k]172Sus scrofaMutation(s): 0 
Gene Names: POLR2G
UniProt
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Entity ID: 34
MoleculeChainsSequence LengthOrganismDetailsImage
DNA-directed RNA polymerase II subunit RPB4HA [auth l]142Sus scrofaMutation(s): 0 
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Entity ID: 24
MoleculeChainsLengthOrganismImage
non-template DNAX [auth b]48synthetic construct
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Entity ID: 25
MoleculeChainsLengthOrganismImage
RNAY [auth c]23synthetic construct
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Entity ID: 26
MoleculeChainsLengthOrganismImage
template DNAZ [auth d]48synthetic construct
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Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.18 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
Other governmentChinathe National key R&D program of China(2016YFA0500700)
Other governmentChinathe National Natural Science Foundation of China(32030055, 31830107, 31821002)
Other governmentChinathe Shanghai Municipal Science and Technology Major Project(2017SHZDZX01)
Other governmentChinaShanghai Municipal Science and Technology Commission(19JC1411500)
Other governmentChinathe National Ten-Thousand Talent Program
Other governmentChinathe Strategic Priority Research Program of the Chinese Academy of Sciences(XDB08000000)

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-15
    Type: Initial release
  • Version 1.1: 2023-03-22
    Changes: Database references