Structure of the Mimivirus genomic fibre in its relaxed 5-start helix form

Experimental Data Snapshot

  • Resolution: 3.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report

This is version 1.1 of the entry. See complete history


The giant mimivirus 1.2 Mb genome is elegantly organized into a 30 nm diameter helical protein shield.

Villalta, A.Schmitt, A.Estrozi, L.F.Quemin, E.R.J.Alempic, J.M.Lartigue, A.Prazak, V.Belmudes, L.Vasishtan, D.Colmant, A.M.G.Honore, F.A.Coute, Y.Grunewald, K.Abergel, C.

(2022) Elife 11

  • DOI: https://doi.org/10.7554/eLife.77607
  • Primary Citation of Related Structures:  
    7PTV, 7YX3, 7YX4, 7YX5

  • PubMed Abstract: 

    Mimivirus is the prototype of the Mimiviridae family of giant dsDNA viruses. Little is known about the organization of the 1.2 Mb genome inside the membrane-limited nucleoid filling the ~0.5 µm icosahedral capsids. Cryo-electron microscopy, cryo-electron tomography, and proteomics revealed that it is encased into a ~30-nm diameter helical protein shell surprisingly composed of two GMC-type oxidoreductases, which also form the glycosylated fibrils decorating the capsid. The genome is arranged in 5- or 6-start left-handed super-helices, with each DNA-strand lining the central channel. This luminal channel of the nucleoprotein fiber is wide enough to accommodate oxidative stress proteins and RNA polymerase subunits identified by proteomics. Such elegant supramolecular organization would represent a remarkable evolutionary strategy for packaging and protecting the genome, in a state ready for immediate transcription upon unwinding in the host cytoplasm. The parsimonious use of the same protein in two unrelated substructures of the virion is unexpected for a giant virus with thousand genes at its disposal.

  • Organizational Affiliation

    Aix-Marseille University, Centre National de la Recherche Scientifique, Information Génomique & Structurale, Unité Mixte de Recherche 7256 (Institut de Microbiologie de la Méditerranée, FR3479, IM2B), Marseille, France.

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative glucose-methanol-choline oxidoreductase protein702Acanthamoeba polyphaga mimivirusMutation(s): 0 
Find proteins for E5L7Z5 (Acanthamoeba polyphaga mimivirus)
Explore E5L7Z5 
Go to UniProtKB:  E5L7Z5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE5L7Z5
Sequence Annotations
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
Query on FAD

Download Ideal Coordinates CCD File 
C27 H33 N9 O15 P2
Experimental Data & Validation

Experimental Data

  • Resolution: 3.70 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
European Research Council (ERC)France832601
Agence Nationale de la Recherche (ANR)FranceANR-16-CE11-0033-01
German Research Foundation (DFG)FranceINST 152/772-1|152/774-1|152/775-1|152/776-1
Wellcome TrustFrance107806/Z/15/Z
German Federal Ministry for Education and ResearchFrance05K18BHA
Alexander von Humboldt FoundationFranceFRA 1200789 HFST-P
Agence Nationale de la Recherche (ANR)FranceANR-10-INBS-04

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-10
    Type: Initial release
  • Version 1.1: 2024-07-17
    Changes: Data collection