7Z3F

Crystal structure of the cupredoxin AcoP from Acidithiobacillus ferrooxidans, oxidized form

• PDB DOI:  https://doi.org/10.2210/pdb7Z3F/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Acidithiobacillus ferrooxidans
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-03-02 Released: 2023-09-13 
• Deposition Author(s): Leone, P., Sciara, G., Ilbert, M.
• Funding Organization(s): Centre National de la Recherche Scientifique (CNRS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.260 
• R-Value Work: 0.236 
• R-Value Observed: 0.237 

Literature

Crystal structure of the cupredoxin AcoP from Acidithiobacillus ferrooxidans

Leone, P., Sciara, G., Ilbert, M.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: SAXS

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 38.87 kDa 
• Atom Count: 2,253 
• Modelled Residue Count: 265 
• Deposited Residue Count: 342 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AcoP	A, B	171	Acidithiobacillus ferrooxidans	Mutation(s): 0  Gene Names: DN052_11965
UniProt
Find proteins for A0A2W1KFF4 (Acidithiobacillus ferrooxidans) Explore A0A2W1KFF4  Go to UniProtKB:  A0A2W1KFF4

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	H [auth A], I [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
CU (Subject of Investigation/LOI)	C [auth A], J [auth B]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N
ACT	D [auth A], E [auth A], K [auth B], L [auth B]	ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M
CL	G [auth A], N [auth B]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA	F [auth A], M [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.70 Å
• R-Value Free: 0.260 
• R-Value Work: 0.236 
• R-Value Observed: 0.237 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.477	α = 90
b = 73.477	β = 90
c = 112.902	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-09-13 
Deposition Author(s): Leone, P., Sciara, G., Ilbert, M.

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Funding Organization	Location	Grant Number
Centre National de la Recherche Scientifique (CNRS)	France	--

Revision History  

• Version 1.0: 2023-09-13
  Type: Initial release