7ZVV

Crystal Structure of Unlinked NS2B-NS3 Protease from Zika Virus in Complex with Inhibitor MI-2196

PDB DOI: https://doi.org/10.2210/pdb7ZVV/pdb

Classification: VIRAL PROTEIN
Organism(s): Zika virus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-05-17 Released: 2023-05-24
Deposition Author(s): Huber, S., Steinmetzer, T.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.75 Å
R-Value Free: 0.222
R-Value Work: 0.187
R-Value Observed: 0.189

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 2.0 of the entry. See complete history.

Literature

Crystal Structure of Unlinked NS2B-NS3 Protease from Zika Virus in Complex with Inhibitor MI-2196

Huber, S., Braun, N., Steinmetzer, T.

To be published.

Macromolecule Content

Total Structure Weight: 25.81 kDa
Atom Count: 1,535
Modelled Residue Count: 193
Deposited Residue Count: 231
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine protease subunit NS2B	A	53	Zika virus	Mutation(s): 0 EC: 3.4.21.91 (UniProt), 3.6.1.15 (UniProt), 3.6.4.13 (UniProt), 2.1.1.56 (UniProt), 2.1.1.57 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for Q32ZE1 (Zika virus) Explore Q32ZE1 Go to UniProtKB: Q32ZE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q32ZE1
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Serine protease NS3	B	178	Zika virus	Mutation(s): 0 EC: 3.4.21.91 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.6.4.13 (PDB Primary Data), 2.1.1.56 (UniProt), 2.1.1.57 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for Q32ZE1 (Zika virus) Explore Q32ZE1 Go to UniProtKB: Q32ZE1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q32ZE1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
3CF (Subject of Investigation/LOI) Query on 3CF Download Ideal Coordinates CCD File SDF format, chain G [auth B] MOL2 format, chain G [auth B]	G [auth B]	3-cyano-L-phenylalanine C₁₀ H₁₀ N₂ O₂ ZHUOMTMPTNZOJE-VIFPVBQESA-N		Interactions Focus chain G [auth B] Interactions & Density Focus chain G [auth B]
4CF (Subject of Investigation/LOI) Query on 4CF Download Ideal Coordinates CCD File SDF format, chain F [auth B] MOL2 format, chain F [auth B]	F [auth B]	4-cyano-L-phenylalanine C₁₀ H₁₀ N₂ O₂ KWIPUXXIFQQMKN-VIFPVBQESA-N		Interactions Focus chain F [auth B] Interactions & Density Focus chain F [auth B]
V7T (Subject of Investigation/LOI) Query on V7T Download Ideal Coordinates CCD File SDF format, chain C [auth B] MOL2 format, chain C [auth B]	C [auth B]	(2R)-6-azanyl-2-carbamimidamido-hexanoic acid C₇ H₁₆ N₄ O₂ FCYNCKFWUCHGHB-RXMQYKEDSA-N		Interactions Focus chain C [auth B] Interactions & Density Focus chain C [auth B]
ZAL (Subject of Investigation/LOI) Query on ZAL Download Ideal Coordinates CCD File SDF format, chain D [auth B] MOL2 format, chain D [auth B]	D [auth B]	3-cyclohexyl-D-alanine C₉ H₁₇ N O₂ ORQXBVXKBGUSBA-MRVPVSSYSA-N		Interactions Focus chain D [auth B] Interactions & Density Focus chain D [auth B]
V8N (Subject of Investigation/LOI) Query on V8N Download Ideal Coordinates CCD File SDF format, chain E [auth B] MOL2 format, chain E [auth B]	E [auth B]	2-[3-(aminomethyl)phenyl]ethanoic acid C₉ H₁₁ N O₂ OMILONVYAUZURK-UHFFFAOYSA-N		Interactions Focus chain E [auth B] Interactions & Density Focus chain E [auth B]