Download MendeleyCrystal Structure of Unlinked NS2B-NS3 Protease from Zika Virus in Complex with Inhibitor MI-2196
Huber, S., Braun, N., Steinmetzer, T.To be published.
7ZVV
Crystal Structure of Unlinked NS2B-NS3 Protease from Zika Virus in Complex with Inhibitor MI-2196
- PDB DOI: https://doi.org/10.2210/pdb7ZVV/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Zika virus
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-05-17 Released: 2023-05-24
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.222
- R-Value Work: 0.187
- R-Value Observed: 0.189
This is version 2.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Serine protease subunit NS2B | 53 | Zika virus | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q32ZE1 (Zika virus) Explore Q32ZE1 Go to UniProtKB: Q32ZE1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q32ZE1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Serine protease NS3 | 178 | Zika virus | Mutation(s): 0 EC: 3.4.21.91 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.6.4.13 (PDB Primary Data) |  | |
UniProt | |||||
Find proteins for Q32ZE1 (Zika virus) Explore Q32ZE1 Go to UniProtKB: Q32ZE1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q32ZE1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 3CF (Subject of Investigation/LOI) Query on 3CF | G [auth B] | 3-cyano-L-phenylalanine C10 H10 N2 O2 ZHUOMTMPTNZOJE-VIFPVBQESA-N |  | ||
| 4CF (Subject of Investigation/LOI) Query on 4CF | F [auth B] | 4-cyano-L-phenylalanine C10 H10 N2 O2 KWIPUXXIFQQMKN-VIFPVBQESA-N |  | ||
| V7T (Subject of Investigation/LOI) Query on V7T | C [auth B] | (2R)-6-azanyl-2-carbamimidamido-hexanoic acid C7 H16 N4 O2 FCYNCKFWUCHGHB-RXMQYKEDSA-N |  | ||
| ZAL (Subject of Investigation/LOI) Query on ZAL | D [auth B] | 3-cyclohexyl-D-alanine C9 H17 N O2 ORQXBVXKBGUSBA-MRVPVSSYSA-N |  | ||
| V8N (Subject of Investigation/LOI) Query on V8N | E [auth B] | 2-[3-(aminomethyl)phenyl]ethanoic acid C9 H11 N O2 OMILONVYAUZURK-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.222
- R-Value Work: 0.187
- R-Value Observed: 0.189
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 49.635 | α = 90 |
| b = 60.645 | β = 90 |
| c = 80.388 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XDS | data scaling |
| PHASER | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-05-24 Deposition Author(s): Huber, S., Steinmetzer, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-05-24
Type: Initial release - Version 2.0: 2023-11-15
Changes: Atomic model, Data collection, Derived calculations - Version 2.1: 2024-02-07
Changes: Refinement description
