Structure of DDB1 bound to DS11-engaged CDK12-cyclin K
Lastname, F.N.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA damage-binding protein 1 | 840 | Homo sapiens | Mutation(s): 0  Gene Names: DDB1, XAP1 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q16531 (Homo sapiens) Explore Q16531  Go to UniProtKB:  Q16531 | |||||
PHAROS:  Q16531 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q16531 | ||||
Protein Feature ViewExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cyclin-dependent kinase 12 | 344 | Homo sapiens | Mutation(s): 0  Gene Names: CDK12, CRK7, CRKRS, KIAA0904 EC: 2.7.11.22 (PDB Primary Data), 2.7.11.23 (PDB Primary Data) | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NYV4 (Homo sapiens) Explore Q9NYV4  Go to UniProtKB:  Q9NYV4 | |||||
PHAROS:  Q9NYV4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NYV4 | ||||
Protein Feature ViewExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cyclin-K | 271 | Homo sapiens | Mutation(s): 0  Gene Names: CCNK, CPR4 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O75909 (Homo sapiens) Explore O75909  Go to UniProtKB:  O75909 | |||||
PHAROS:  O75909 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O75909 | ||||
Protein Feature ViewExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RSU (Subject of Investigation/LOI) Query on RSU | HA [auth H], P [auth B], Y [auth E] | (2~{R})-2-[[6-(3-phenylpropylamino)-9-propan-2-yl-purin-2-yl]amino]butan-1-ol C21 H30 N6 O HXKIFNLNVMCGAG-QGZVFWFLSA-N | Ligand Interaction | ||
SO4 Query on SO4 | AA [auth F] BA [auth F] CA [auth F] DA [auth G] EA [auth G] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | Ligand Interaction | ||
EDO Query on EDO | J [auth A], T [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
TPO Query on TPO | B, E, H | L-PEPTIDE LINKING | C4 H10 N O6 P | THR |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 249.356 | α = 90 |
b = 249.356 | β = 90 |
c = 217.993 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
Coot | model building |
STARANISO | data scaling |
autoPROC | data processing |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
European Research Council (ERC) | European Union | 666068 |
Swiss National Science Foundation | Switzerland | 31003A_179541 |
Swiss National Science Foundation | Switzerland | 310030_301206 |
Swiss Cancer League | Switzerland | 4980-02-2020 |
Swiss National Science Foundation | Switzerland | CRSII5_186230 |
Marie Sklodowska-Curie Actions, FragNET ITN | European Union | 765445 |
Other private | -- |