Design of a Cereblon construct for crystallographic and biophysical studies of protein degraders
Kroupova, A., Zollman, D., Ciulli, A.To be published.
Experimental Data Snapshot
Starting Model: in silico
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein cereblon | 329 | Homo sapiens | Mutation(s): 12  Gene Names: CRBN, AD-006 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q96SW2 (Homo sapiens) Explore Q96SW2  Go to UniProtKB:  Q96SW2 | |||||
PHAROS:  Q96SW2 GTEx:  ENSG00000113851  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q96SW2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
QFC (Subject of Investigation/LOI) Query on QFC | C [auth A] | Mezigdomide C32 H30 F N5 O4 YTINZZFBHWSAGL-NDEPHWFRSA-N | |||
ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 51.046 | α = 90 |
b = 51.046 | β = 90 |
c = 267.677 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
autoPROC | data reduction |
STARANISO | data scaling |
PHASER | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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Other private | -- |