8UBU

Cryo-EM structure of dimeric SCF-FBXL17-BACH1BTB E3 ligase complex close conformation


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Distinct Perception Mechanisms of BACH1 Quaternary Structure Degrons by Two F-box Proteins under Oxidative Stress.

Cao, S.Shi, H.Garcia, S.F.Kito, Y.Shi, H.Goldberg, H.V.Ponce, J.Ueberheide, B.Lignitto, L.Pagano, M.Zheng, N.

(2024) bioRxiv 

  • DOI: https://doi.org/10.1101/2024.06.03.594717
  • Primary Citation of Related Structures:  
    8UA3, 8UA6, 8UAH, 8UBT, 8UBU, 8UBV

  • PubMed Abstract: 

    The transcription factor BACH1 regulates heme homeostasis and oxidative stress responses and promotes cancer metastasis upon aberrant accumulation. Its stability is controlled by two F-box protein ubiquitin ligases, FBXO22 and FBXL17. Here we show that the homodimeric BTB domain of BACH1 functions as a previously undescribed quaternary structure degron, which is deciphered by the two F-box proteins via distinct mechanisms. After BACH1 is released from chromatin by heme, FBXO22 asymmetrically recognizes a cross-protomer interface of the intact BACH1 BTB dimer, which is otherwise masked by the co-repressor NCOR1. If the BACH1 BTB dimer escapes the surveillance by FBXO22 due to oxidative modifications, its quaternary structure integrity is probed by a pair of FBXL17, which simultaneously engage and remodel the two BTB protomers into E3-bound monomers for ubiquitination. By unveiling the multifaceted regulatory mechanisms of BACH1 stability, our studies highlight the abilities of ubiquitin ligases to decode high-order protein assemblies and reveal therapeutic opportunities to block cancer invasion via compound-induced BACH1 destabilization.


  • Organizational Affiliation

    Department of Pharmacology, Box 357280, University of Washington, Seattle, WA, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cullin-1A,
G [auth H]
764Homo sapiensMutation(s): 0 
Gene Names: CUL1
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PHAROS:  Q13616
GTEx:  ENSG00000055130 
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UniProt GroupQ13616
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
E3 ubiquitin-protein ligase RBX1, N-terminally processedB,
H [auth I]
93Homo sapiensMutation(s): 0 
Gene Names: RBX1RNF75ROC1
EC: 2.3.2.32 (UniProt), 2.3.2.27 (UniProt)
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Find proteins for P62877 (Homo sapiens)
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GTEx:  ENSG00000100387 
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UniProt GroupP62877
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
S-phase kinase-associated protein 1C,
F [auth G]
162Homo sapiensMutation(s): 0 
Gene Names: SKP1EMC19OCP2SKP1ATCEB1L
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Find proteins for P63208 (Homo sapiens)
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PHAROS:  P63208
GTEx:  ENSG00000113558 
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UniProt GroupP63208
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
F-box/LRR-repeat protein 17D,
I [auth K]
392Homo sapiensMutation(s): 0 
Gene Names: FBXL17
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UF56 (Homo sapiens)
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PHAROS:  Q9UF56
GTEx:  ENSG00000145743 
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UniProt GroupQ9UF56
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription regulator protein BACH1E,
J [auth L]
122Homo sapiensMutation(s): 0 
Gene Names: BACH1
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Find proteins for O14867 (Homo sapiens)
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PHAROS:  O14867
GTEx:  ENSG00000156273 
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UniProt GroupO14867
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-06
    Type: Initial release