8UBV

Cryo-EM structure of dimeric FBXL17-BACH1BTB E3 ubiquitin ligase complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Recognition of BACH1 quaternary structure degrons by two F-box proteins under oxidative stress.

Cao, S.Garcia, S.F.Shi, H.James, E.I.Kito, Y.Shi, H.Mao, H.Kaisari, S.Rona, G.Deng, S.Goldberg, H.V.Ponce, J.Ueberheide, B.Lignitto, L.Guttman, M.Pagano, M.Zheng, N.

(2024) Cell 187: 7568-7584.e22

  • DOI: https://doi.org/10.1016/j.cell.2024.10.012
  • Primary Citation of Related Structures:  
    8UA3, 8UA6, 8UAH, 8UBT, 8UBU, 8UBV

  • PubMed Abstract: 

    Ubiquitin-dependent proteolysis regulates diverse cellular functions with high substrate specificity, which hinges on the ability of ubiquitin E3 ligases to decode the targets' degradation signals, i.e., degrons. Here, we show that BACH1, a transcription repressor of antioxidant response genes, features two distinct unconventional degrons encrypted in the quaternary structure of its homodimeric BTB domain. These two degrons are both functionalized by oxidative stress and are deciphered by two complementary E3s. FBXO22 recognizes a degron constructed by the BACH1 BTB domain dimer interface, which is unmasked from transcriptional co-repressors after oxidative stress releases BACH1 from chromatin. When this degron is impaired by oxidation, a second BACH1 degron manifested by its destabilized BTB dimer is probed by a pair of FBXL17 proteins that remodels the substrate into E3-bound monomers for ubiquitination. Our findings highlight the multidimensionality of protein degradation signals and the functional complementarity of different ubiquitin ligases targeting the same substrate.


  • Organizational Affiliation

    Department of Pharmacology, University of Washington, Box 357280, Seattle, WA 98195, USA; Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
F-box/LRR-repeat protein 17A [auth B],
C [auth H]
392Homo sapiensMutation(s): 0 
Gene Names: FBXL17
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UF56 (Homo sapiens)
Explore Q9UF56 
Go to UniProtKB:  Q9UF56
PHAROS:  Q9UF56
GTEx:  ENSG00000145743 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UF56
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Transcription regulator protein BACH1B [auth C],
D [auth I]
122Homo sapiensMutation(s): 0 
Gene Names: BACH1
UniProt & NIH Common Fund Data Resources
Find proteins for O14867 (Homo sapiens)
Explore O14867 
Go to UniProtKB:  O14867
PHAROS:  O14867
GTEx:  ENSG00000156273 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO14867
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Howard Hughes Medical Institute (HHMI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-06
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Data collection, Database references
  • Version 1.2: 2024-11-20
    Changes: Data collection, Database references
  • Version 1.3: 2024-11-27
    Changes: Data collection
  • Version 1.4: 2025-01-08
    Changes: Data collection, Database references