9BCQ

Extracellular domain of GC-A bound to ANP


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Architecture and activation of single-pass transmembrane receptor guanylyl cyclase.

Liu, S.Payne, A.M.Wang, J.Zhu, L.Paknejad, N.Eng, E.T.Liu, W.Miao, Y.Hite, R.K.Huang, X.Y.

(2024) Nat Struct Mol Biol 

  • DOI: https://doi.org/10.1038/s41594-024-01426-z
  • Primary Citation of Related Structures:  
    9BCL, 9BCN, 9BCO, 9BCP, 9BCQ, 9BCS, 9BCV

  • PubMed Abstract: 

    The heart, in addition to its primary role in blood circulation, functions as an endocrine organ by producing cardiac hormone natriuretic peptides. These hormones regulate blood pressure through the single-pass transmembrane receptor guanylyl cyclase A (GC-A), also known as natriuretic peptide receptor 1. The binding of the peptide hormones to the extracellular domain of the receptor activates the intracellular guanylyl cyclase domain of the receptor to produce the second messenger cyclic guanosine monophosphate. Despite their importance, the detailed architecture and domain interactions within full-length GC-A remain elusive. Here we present cryo-electron microscopy structures, functional analyses and molecular dynamics simulations of full-length human GC-A, in both the absence and the presence of atrial natriuretic peptide. The data reveal the architecture of full-length GC-A, highlighting the spatial arrangement of its various functional domains. This insight is crucial for understanding how different parts of the receptor interact and coordinate during activation. The study elucidates the molecular basis of how extracellular signals are transduced across the membrane to activate the intracellular guanylyl cyclase domain.


  • Organizational Affiliation

    Department of Physiology and Biophysics, Weill Cornell Medical College of Cornell University, New York, NY, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Atrial natriuretic peptide receptor 1
A, B
1,040Homo sapiensMutation(s): 0 
Gene Names: NPR1ANPRA
EC: 4.6.1.2
UniProt & NIH Common Fund Data Resources
Find proteins for P16066 (Homo sapiens)
Explore P16066 
Go to UniProtKB:  P16066
PHAROS:  P16066
GTEx:  ENSG00000169418 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16066
Glycosylation
Glycosylation Sites: 2Go to GlyGen: P16066-1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Atrial natriuretic peptide28Homo sapiensMutation(s): 0 
Gene Names: NPPAANPPND
UniProt & NIH Common Fund Data Resources
Find proteins for P01160 (Homo sapiens)
Explore P01160 
Go to UniProtKB:  P01160
PHAROS:  P01160
GTEx:  ENSG00000175206 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP01160
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

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Entity ID: 3
MoleculeChains Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
D, E, F
2N-Glycosylation
Glycosylation Resources
GlyTouCan:  G42666HT
GlyCosmos:  G42666HT
GlyGen:  G42666HT
Entity ID: 4
MoleculeChains Length2D Diagram Glycosylation3D Interactions
alpha-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
G
3N-Glycosylation
Glycosylation Resources
GlyTouCan:  G66019PC
GlyCosmos:  G66019PC
GlyGen:  G66019PC
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM138676

Revision History  (Full details and data files)

  • Version 1.0: 2024-11-27
    Type: Initial release