Structure of an Archaeal Ribosome with a Divergent Active Site
Nissley, A.J., Shulgina, Y., Kivimae, R.W., Downing, B.E., Penev, P.I., Banfield, J.F., Nayak, D.D., Cate, J.H.D.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL2 | D [auth AA] | 244 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MS41 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MS41  Go to UniProtKB:  A3MS41 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MS41 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL3 | E [auth AB] | 338 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWI4 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWI4  Go to UniProtKB:  A3MWI4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWI4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL4 | F [auth AC] | 285 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWI5 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWI5  Go to UniProtKB:  A3MWI5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWI5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL5 | G [auth AD] | 178 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MXP8 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MXP8  Go to UniProtKB:  A3MXP8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MXP8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL6 | H [auth AE] | 196 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWV5 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWV5  Go to UniProtKB:  A3MWV5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWV5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL8 | I [auth AF] | 149 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTA9 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTA9  Go to UniProtKB:  A3MTA9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTA9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL13 | J [auth AG] | 186 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MXZ7 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MXZ7  Go to UniProtKB:  A3MXZ7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MXZ7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL13 | K [auth AH] | 157 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTP8 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTP8  Go to UniProtKB:  A3MTP8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTP8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL14 | L [auth AI] | 144 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MX34 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MX34  Go to UniProtKB:  A3MX34 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MX34 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL14 | M [auth AJ], N [auth AK] | 103 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MS76 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MS76  Go to UniProtKB:  A3MS76 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MS76 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL15 | O [auth AL] | 156 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MUZ1 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MUZ1  Go to UniProtKB:  A3MUZ1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MUZ1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
50S ribosomal protein L15e | P [auth AM] | 189 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWR6 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWR6  Go to UniProtKB:  A3MWR6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWR6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 16 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL16 | Q [auth AN] | 178 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MXP3 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MXP3  Go to UniProtKB:  A3MXP3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MXP3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 17 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL18 | R [auth AO] | 205 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MSJ3 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MSJ3  Go to UniProtKB:  A3MSJ3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MSJ3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 18 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL18 | S [auth AP] | 122 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MXZ6 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MXZ6  Go to UniProtKB:  A3MXZ6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MXZ6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 19 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL19 | T [auth AQ] | 147 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MSJ4 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MSJ4  Go to UniProtKB:  A3MSJ4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MSJ4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 20 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL20 | U [auth AR] | 78 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MX77 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MX77  Go to UniProtKB:  A3MX77 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MX77 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 21 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL21 | V [auth AS] | 99 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWX9 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWX9  Go to UniProtKB:  A3MWX9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWX9 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 22 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL22 | W [auth AT] | 184 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTL6 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTL6  Go to UniProtKB:  A3MTL6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTL6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 23 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL23 | X [auth AU] | 81 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWI6 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWI6  Go to UniProtKB:  A3MWI6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWI6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 24 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL24 | Y [auth AV] | 128 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWZ8 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWZ8  Go to UniProtKB:  A3MWZ8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWZ8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 25 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL24 | Z [auth AW] | 62 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTA8 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTA8  Go to UniProtKB:  A3MTA8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTA8 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 26 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL29 | AA [auth AX] | 79 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTL2 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTL2  Go to UniProtKB:  A3MTL2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTL2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 27 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein uL30 | BA [auth AY] | 179 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MU87 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MU87  Go to UniProtKB:  A3MU87 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MU87 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 28 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL30 | CA [auth AZ] | 101 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MXZ2 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MXZ2  Go to UniProtKB:  A3MXZ2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MXZ2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 29 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL31 | DA [auth Aa] | 91 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MX75 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MX75  Go to UniProtKB:  A3MX75 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MX75 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 30 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL32 | EA [auth Ab] | 153 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MSJ5 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MSJ5  Go to UniProtKB:  A3MSJ5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MSJ5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 31 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL34 | FA [auth Ac] | 84 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MV68 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MV68  Go to UniProtKB:  A3MV68 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MV68 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 32 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL37 | GA [auth Ad] | 52 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MY38 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MY38  Go to UniProtKB:  A3MY38 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MY38 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 33 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
LSU ribosomal protein L38E | HA [auth Ae] | 67 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTT1 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTT1  Go to UniProtKB:  A3MTT1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTT1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 34 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL39 | IA [auth Af] | 51 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MUU4 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MUU4  Go to UniProtKB:  A3MUU4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MUU4 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 35 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL40 | JA [auth Ag] | 53 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MX99 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MX99  Go to UniProtKB:  A3MX99 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MX99 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 36 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
eL42 | KA [auth Ah] | 91 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 37 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Large ribosomal subunit protein eL43 | LA [auth Ai] | 102 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MUM7 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MUM7  Go to UniProtKB:  A3MUM7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MUM7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 38 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
DJ-1/PfpI domain-containing protein | MA [auth Aj] | 184 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTM7 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTM7  Go to UniProtKB:  A3MTM7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTM7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 39 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
PaREP1 domain containing protein | NA [auth Ak] | 93 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWU0 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWU0  Go to UniProtKB:  A3MWU0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWU0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 40 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein eS1 | OA [auth BA] | 222 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MVE0 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MVE0  Go to UniProtKB:  A3MVE0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MVE0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 41 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS2 | PA [auth BB] | 208 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MS50 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MS50  Go to UniProtKB:  A3MS50 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MS50 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 42 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS3 | QA [auth BC] | 216 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTL3 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTL3  Go to UniProtKB:  A3MTL3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTL3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 43 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS4 | RA [auth BD] | 159 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MUS9 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MUS9  Go to UniProtKB:  A3MUS9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MUS9 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 44 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein eS4 | SA [auth BE] | 237 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWZ7 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWZ7  Go to UniProtKB:  A3MWZ7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWZ7 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 45 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS5 | TA [auth BF] | 202 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MU88 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MU88  Go to UniProtKB:  A3MU88 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MU88 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 46 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein eS6 | UA [auth BG] | 151 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MUD0 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MUD0  Go to UniProtKB:  A3MUD0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MUD0 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 47 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS7 | VA [auth BH] | 223 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MS29 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MS29  Go to UniProtKB:  A3MS29 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MS29 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 48 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS8 | WA [auth BI] | 130 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MSJ6 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MSJ6  Go to UniProtKB:  A3MSJ6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MSJ6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 49 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein eS8 | XA [auth BJ] | 131 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MWY2 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MWY2  Go to UniProtKB:  A3MWY2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MWY2 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 50 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS9 | YA [auth BK] | 142 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MXZ8 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MXZ8  Go to UniProtKB:  A3MXZ8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MXZ8 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 51 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS10 | ZA [auth BL] | 106 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MT22 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MT22  Go to UniProtKB:  A3MT22 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MT22 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 52 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS11 | AB [auth BM] | 141 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MX63 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MX63  Go to UniProtKB:  A3MX63 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MX63 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 53 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS12 | BB [auth BN] | 147 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MXZ4 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MXZ4  Go to UniProtKB:  A3MXZ4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MXZ4 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 54 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS13 | CB [auth BO] | 153 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MUT0 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MUT0  Go to UniProtKB:  A3MUT0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MUT0 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 55 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS14 | DB [auth BP] | 54 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MSJ7 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MSJ7  Go to UniProtKB:  A3MSJ7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MSJ7 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 56 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS15 | EB [auth BQ] | 151 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MVD1 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MVD1  Go to UniProtKB:  A3MVD1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MVD1 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 57 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS17 | FB [auth BR] | 147 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTT7 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTT7  Go to UniProtKB:  A3MTT7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTT7 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 58 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein eS17 | GB [auth BS] | 71 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MS42 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MS42  Go to UniProtKB:  A3MS42 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MS42 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 59 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein uS19 | HB [auth BT] | 158 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MTT6 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MTT6  Go to UniProtKB:  A3MTT6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MTT6 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 60 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein eS19 | IB [auth BU] | 158 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MUU6 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MUU6  Go to UniProtKB:  A3MUU6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MUU6 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 61 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein eS24 | JB [auth BV] | 128 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MSX4 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MSX4  Go to UniProtKB:  A3MSX4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MSX4 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 62 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
SSU ribosomal protein S25E | KB [auth BW] | 110 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MV37 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MV37  Go to UniProtKB:  A3MV37 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MV37 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 63 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
SSU ribosomal protein S26E | LB [auth BX] | 100 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MV49 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MV49  Go to UniProtKB:  A3MV49 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MV49 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 64 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small ribosomal subunit protein eS27 | MB [auth BY] | 67 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MUV2 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MUV2  Go to UniProtKB:  A3MUV2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MUV2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 65 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
eS28 | NB [auth BZ] | 77 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 66 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
SSU ribosomal protein S30E | OB [auth Ba] | 54 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MSW3 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MSW3  Go to UniProtKB:  A3MSW3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MSW3 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 67 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
aS35 | PB [auth Bb] | 68 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 68 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein | QB [auth Bc] | 65 | Pyrobaculum calidifontis JCM 11548 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for A3MY11 (Pyrobaculum calidifontis (strain DSM 21063 / JCM 11548 / VA1)) Explore A3MY11  Go to UniProtKB:  A3MY11 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A3MY11 | ||||
Sequence AnnotationsExpand | |||||
|
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
5S rRNA | A [auth 2] | 129 | Pyrobaculum calidifontis JCM 11548 | ||
Sequence AnnotationsExpand | |||||
|
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
23S rRNA | B [auth 1] | 3,024 | Pyrobaculum calidifontis JCM 11548 | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
16S rRNA | C [auth 4] | 1,498 | Pyrobaculum calidifontis JCM 11548 | ||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SPM Query on SPM | AC [auth 1] AD [auth 1] AK [auth 4] BC [auth 1] BD [auth 1] | SPERMINE C10 H26 N4 PFNFFQXMRSDOHW-UHFFFAOYSA-N | |||
ZN Query on ZN | BO [auth BP] CO [auth BR] DO [auth BX] EO [auth BY] FO [auth Bc] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | AE [auth 1] AF [auth 1] AG [auth 1] AH [auth 1] AI [auth 1] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
---|---|---|
MODEL REFINEMENT | Coot | |
MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | cryoSPARC | 4.4 |
Funding Organization | Location | Grant Number |
---|---|---|
National Science Foundation (NSF, United States) | United States | CHE-2002182 |