9F6O

Human divalent metal transporter 1 (DMT1/SLC11A2) in complex with sybody 1, in an occluded state

PDB DOI: https://doi.org/10.2210/pdb9F6O/pdb
EM Map EMD-50236: EMDB EMDataResource

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens, synthetic construct
Expression System: Homo sapiens, Escherichia coli
Mutation(s): No
Membrane Protein: Yes PDBTM

Deposited: 2024-05-02 Released: 2024-11-27
Deposition Author(s): Liziczai, M., Dutzler, R.
Funding Organization(s): Swiss National Science Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis for metal ion transport by the human SLC11 proteins DMT1 and NRAMP1

Liziczai, M., Dutzler, R.

To be published.

Macromolecule Content

Total Structure Weight: 87.92 kDa
Atom Count: 4,571
Modelled Residue Count: 591
Deposited Residue Count: 801
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Natural resistance-associated macrophage protein 2	A	655	Homo sapiens	Mutation(s): 0 Gene Names: SLC11A2 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P49281 (Homo sapiens) Explore P49281 Go to UniProtKB: P49281
PHAROS: P49281 GTEx: ENSG00000110911
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P49281
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Sybody 1	B	146	synthetic construct	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.90 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-27

Deposition Author(s):

Funding Organization	Location	Grant Number
Swiss National Science Foundation	Switzerland	--

Revision History (Full details and data files)

Version 1.0: 2024-11-27
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.