9FCH | pdb_00009fch

P116 dimer in the full state (PDB structure of the full-length ectodomain truncated to amino acids 246-818)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.52 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

How does Mycoplasma pneumoniae scavenge lipids from its host membranes?

Manger, S.Arghittu, S.M.Sprankel, L.Meier-Credo, J.Wieland, K.Bublak, D.Langer, J.Covino, R.Frangakis, A.S.

(2025) Sci Adv 11: eady4746-eady4746

  • DOI: https://doi.org/10.1126/sciadv.ady4746
  • Primary Citation of Related Structures:  
    9FCH

  • PubMed Abstract: 

    Lipid acquisition and transport are fundamental processes in all organisms. Here, we investigate the lipid uptake and delivery mechanism of the minimal model organism Mycoplasma pneumoniae . We show that the essential protein P116 can transport lipids between liposomes independently and without adenosine 5'-triphosphate consumption. Our structural data and molecular dynamics simulations reveal the mechanism by which the amino-terminal region of P116 perturbs the membrane, the lipid transfer route, and the regulation of membrane binding by the cargo mass within P116's large hydrophobic cavity. When adequately filled with cargo, P116 undergoes a rapid conformational change that modulates membrane binding. Together, our results show that Mycoplasma developed an integrated lipid uptake and delivery machinery that simplifies the complex multiprotein pathways used by higher developed organisms.


  • Organizational Affiliation
    • Buchmann Institute for Molecular Life Sciences and Institute for Biophysics, Goethe University, Frankfurt am Main, Germany.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Uncharacterized protein MG075 homolog
A, B
573Mycoplasmoides pneumoniae M129Mutation(s): 0 
Gene Names: MPN_213G07_orf1030MP618
UniProt
Find proteins for P75556 (Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1))
Explore P75556 
Go to UniProtKB:  P75556
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP75556
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 6.52 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2024-05-29 
  • Deposition Author(s): Mager, S.

Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-29
    Type: Initial release
  • Version 1.1: 2025-10-08
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2025-10-15
    Changes: Data collection, Database references
  • Version 1.3: 2025-10-22
    Changes: Data collection, Database references