9I5K | pdb_00009i5k

Structure of the Chaetomium thermophilum Pmt4 homodimer (C2 symmetry)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
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Literature

Structural characterisation of the fungal Pmt4 homodimer.

McDowell, M.A.Wild, K.Fiorentino, F.Bausewein, D.Metschies, A.Chiapparino, A.Hackmann, Y.Bilsing, F.L.Brenske, D.Mortensen, S.Wu, D.Robinson, C.V.Strahl, S.Sinning, I.

(2025) Nat Commun 16: 11134-11134

  • DOI: https://doi.org/10.1038/s41467-025-67412-1
  • Primary Citation of Related Structures:  
    9I5K, 9I5L

  • PubMed Abstract: 

    Protein O-mannosyltransferases (PMTs) are conserved endoplasmic reticulum membrane-embedded enzymes responsible for the transfer of mannose from dolichol phosphate-mannose (Dol-P-Man) to serine/threonine-rich protein substrates or unfolded proteins. PMTs from three subfamilies form obligate dimers with different substrate specificities and require the concerted action of their transmembrane domains (TMDs) and a luminal MIR domain for catalysis. Here, we present structures, native mass spectrometry, and structure-based mutagenesis of the fungal Pmt4 homodimer. The core fold of the TMDs and MIR domain is conserved with the Pmt1-Pmt2 heterodimer, indicating a shared catalytic mechanism. Distinct from Pmt4, the MIR domain interacts in cis with the TMDs of the same subunit and has a β-hairpin insertion required for O-mannosylation of substrates. We further identify a cytosolic binding site for substrate Dol-P-Man within the Pmt4 TMDs, which is conserved amongst PMTs and important for in vivo activity. Thus, we provide a framework to understand the substrate specificity and regulation of the Pmt4 homodimer.


  • Organizational Affiliation
    • Heidelberg University Biochemistry Centre (BZH), Heidelberg, Germany. melanie.mcdowell@biophys.mpg.de.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dolichyl-phosphate-mannose--protein mannosyltransferase
A, B
804Thermochaetoides thermophilaMutation(s): 0 
Gene Names: CTHT_0059600
EC: 2.4.1.109
UniProt
Find proteins for G0SET1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
Explore G0SET1 
Go to UniProtKB:  G0SET1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0SET1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyFOR2509 (P07)

Revision History  (Full details and data files)

  • Version 1.0: 2025-12-24
    Type: Initial release