9KBQ

Crystal structure of PHAb10, a peptidoglycan hydrolase with thermal stability and broad-spectrum

PDB DOI: https://doi.org/10.2210/pdb9KBQ/pdb

Classification: LYASE
Organism(s): Acinetobacter baumannii
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2024-10-31 Released: 2024-11-27
Deposition Author(s): Hu, F.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.52 Å
R-Value Free: 0.215
R-Value Work: 0.192
R-Value Observed: 0.193

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of PHAb10, a peptidoglycan hydrolase with thermal stability and broad-spectrum

Hu, F.

To be published.

Macromolecule Content

Total Structure Weight: 33.08 kDa
Atom Count: 2,552
Modelled Residue Count: 294
Deposited Residue Count: 298
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lysozyme	A, B	149	Acinetobacter baumannii	Mutation(s): 0 Gene Names: FJU42_09780 EC: 3.2.1.17
UniProt
Find proteins for A0A8B4M5Z7 (Acinetobacter baumannii) Explore A0A8B4M5Z7 Go to UniProtKB: A0A8B4M5Z7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A8B4M5Z7
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.52 Å
R-Value Free: 0.215
R-Value Work: 0.192
R-Value Observed: 0.193
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 31.86	α = 90
b = 73.77	β = 93.02
c = 78.62	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
xia2	data scaling
PHASES	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-11-27

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	81802001

Revision History (Full details and data files)

Version 1.0: 2024-11-27
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.