8IB9
Respiratory complex CI:CIII2, type IB, Wild type mouse under cold temperature
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8106705 | 3002200 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8067568 | 3002200 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | NADH-quinone oxidoreductase, subunit 11-like | 8067562 | 3002200 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8067566 | 3002280 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8093349 | 3002280 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8067564 | 3002280 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8093346 | 3002280 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8093350 | 3002280 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8067557 | 3002280 | SCOP2B (2022-06-29) |
Q | SCOP2B Superfamily | NADH-ubiquinone oxidoreductase-like | 8061337 | 3002258 | SCOP2B (2022-06-29) |
S | SCOP2B Superfamily | Thioredoxin-like | 8065223 | 3000031 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8085721 | 3002291 | SCOP2B (2022-06-29) |
T | SCOP2B Superfamily | ACP-like | 8074644 | 3001805 | SCOP2B (2022-06-29) |
U | SCOP2B Superfamily | ACP-like | 8074644 | 3001805 | SCOP2B (2022-06-29) |
X | SCOP2B Superfamily | CHCH-like | 8093202 | 3002691 | SCOP2B (2022-06-29) |
X | SCOP2B Superfamily | CHCH-like | 8093203 | 3002691 | SCOP2B (2022-06-29) |
GA [auth g] | SCOP2B Superfamily | ESSS subunit of respiratory complex I | 8104651 | 3002418 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | HydB/Nqo4-like | 8100336 | 3001849 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Thioredoxin-like | 8100476 | 3000031 | SCOP2B (2022-06-29) |
JB [auth Af] | SCOP2B Superfamily | 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8105497 | 3000797 | SCOP2B (2022-06-29) |
YA [auth AF] | SCOP2B Superfamily | 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8105497 | 3000797 | SCOP2B (2022-06-29) |
KB [auth Ag] | SCOP2B Superfamily | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8105495 | 3000770 | SCOP2B (2022-06-29) |
ZA [auth AG] | SCOP2B Superfamily | Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8105495 | 3000770 | SCOP2B (2022-06-29) |
AB [auth AH] | SCOP2B Superfamily | Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8105459 | 3000806 | SCOP2B (2022-06-29) |
LB [auth Ah] | SCOP2B Superfamily | Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8105459 | 3000806 | SCOP2B (2022-06-29) |
MB [auth Aj] | SCOP2B Superfamily | Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8105489 | 3000779 | SCOP2B (2022-06-29) |
NB [auth Ak] | SCOP2B Superfamily | Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 8105493 | 3000787 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Antiporter subunits half-channel-like | 8067551 | 3002280 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF15879 | NADH-ubiquinone oxidoreductase MWFE subunit (MWFE) | NADH-ubiquinone oxidoreductase MWFE subunit | - | Family | |
PF00507 | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 (Oxidored_q4) | NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 | - | Family | |
PF14813 | NADH dehydrogenase 1 beta subcomplex subunit 2 (NADH_B2) | NADH dehydrogenase 1 beta subcomplex subunit 2 | - | Family | |
PF00499 | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (Oxidored_q3) | NADH-ubiquinone/plastoquinone oxidoreductase chain 6 | - | Family | |
PF08122 | NADH-ubiquinone oxidoreductase B12 subunit family (NDUF_B12) | NADH-ubiquinone oxidoreductase B12 subunit family | - | Family | |
PF00420 | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L (Oxidored_q2) | NADH-ubiquinone/plastoquinone oxidoreductase chain 4L | - | Family | |
PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family | |
PF06455 | NADH dehydrogenase subunit 5 C-terminus (NADH5_C) | NADH dehydrogenase subunit 5 C-terminus | - | Family | |
PF00662 | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus (Proton_antipo_N) | NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus | - | Family | |
PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family | |
PF07225 | NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) (NDUF_B4) | NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4) | - | Family | |
PF01059 | NADH-ubiquinone oxidoreductase chain 4, amino terminus (Oxidored_q5_N) | NADH-ubiquinone oxidoreductase chain 4, amino terminus | - | Family | |
PF05347 | Complex 1 protein (LYR family) (Complex1_LYR) | Complex 1 protein (LYR family) | - | Family | |
PF00361 | Proton-conducting membrane transporter (Proton_antipo_M) | Proton-conducting membrane transporter | - | Family | |
PF06444 | NADH dehydrogenase subunit 2 C-terminus (NADH_dehy_S2_C) | NADH dehydrogenase subunit 2 C-terminus | - | Family | |
PF01712 | Deoxynucleoside kinase (dNK) | Deoxynucleoside kinase | This family consists of various deoxynucleoside kinases cytidine EC:2.7.1.74, guanosine EC:2.7.1.113, adenosine EC:2.7.1.76 and thymidine kinase EC:2.7.1.21 (which also phosphorylates deoxyuridine and deoxycytosine.) These enzymes catalyse the prod ... | Domain | |
PF05676 | NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) (NDUF_B7) | NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7) | - | Family | |
PF05368 | NmrA-like family (NmrA) | NmrA-like family | - | Family | |
PF10249 | NADH-ubiquinone oxidoreductase subunit 10 (NDUFB10) | NADH-ubiquinone oxidoreductase subunit 10 | - | Family | |
PF04800 | NADH dehydrogenase ubiquinone Fe-S protein 4 (NDUS4) | NADH dehydrogenase ubiquinone Fe-S protein 4 | - | Family | |
PF05071 | NADH ubiquinone oxidoreductase subunit NDUFA12 (NDUFA12) | NADH ubiquinone oxidoreductase subunit NDUFA12 | - | Family | |
PF10276 | Zinc-finger domain (zf-CHCC) | Zinc-finger domain | This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C. | Domain | |
PF07347 | NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) (CI-B14_5a) | NADH:ubiquinone oxidoreductase subunit B14.5a (Complex I-B14.5a) | - | Family | |
PF05047 | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8) | Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain | The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ... | Domain | |
PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family | |
PF14987 | NADH dehydrogenase 1 alpha subcomplex subunit 3 (NADHdh_A3) | NADH dehydrogenase 1 alpha subcomplex subunit 3 | - | Family | |
PF00550 | Phosphopantetheine attachment site (PP-binding) | Phosphopantetheine attachment site | A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ... | Domain | |
PF04716 | ETC complex I subunit conserved region (ETC_C1_NDUFA5) | ETC complex I subunit conserved region | - | Family | |
PF13233 | Complex1_LYR-like (Complex1_LYR_2) | Complex1_LYR-like | - | Family | |
PF06747 | CHCH domain (CHCH) | CHCH domain | we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extende ... | Domain | |
PF02466 | Tim17/Tim22/Tim23/Pmp24 family (Tim17) | Tim17/Tim22/Tim23/Pmp24 family | - | Family | |
PF00329 | Respiratory-chain NADH dehydrogenase, 30 Kd subunit (Complex1_30kDa) | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | - | Family | |
PF06374 | NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) (NDUF_C2) | NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) | - | Family | |
PF00346 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit (Complex1_49kDa) | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | - | Family | |
EB [auth Aa], TA [auth AA] | PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain |
EB [auth Aa], TA [auth AA] | PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family |
FB [auth Ab], UA [auth AB] | PF05193 | Peptidase M16 inactive domain (Peptidase_M16_C) | Peptidase M16 inactive domain | Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp [1]. | Domain |
FB [auth Ab], UA [auth AB] | PF00675 | Insulinase (Peptidase family M16) (Peptidase_M16) | Insulinase (Peptidase family M16) | - | Family |
GB [auth Ac], VA [auth AC] | PF00032 | Cytochrome b(C-terminal)/b6/petD (Cytochrom_B_C) | Cytochrome b(C-terminal)/b6/petD | - | Domain |
GB [auth Ac], VA [auth AC] | PF00033 | Cytochrome b/b6/petB (Cytochrome_B) | Cytochrome b/b6/petB | - | Domain |
HB [auth Ad], WA [auth AD] | PF02167 | Cytochrome C1 family (Cytochrom_C1) | Cytochrome C1 family | - | Family |
BB [auth AI], IB [auth Ae], XA [auth AE] | PF02921 | Ubiquinol cytochrome reductase transmembrane region (UCR_TM) | Ubiquinol cytochrome reductase transmembrane region | - | Family |
BB [auth AI], IB [auth Ae], XA [auth AE] | PF00355 | Rieske [2Fe-2S] domain (Rieske) | Rieske [2Fe-2S] domain | The rieske domain has a [2Fe-2S] centre. Two conserved cysteines coordinate one Fe ion, while the other Fe ion is coordinated by two conserved histidines. In hyperthermophilic archaea there is a SKTPCX(2-3)C motif at the C-terminus. The cysteines in ... | Domain |
PF01257 | Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx) | Thioredoxin-like [2Fe-2S] ferredoxin | - | Family | |
KB [auth Ag], ZA [auth AG] | PF02939 | UcrQ family (UcrQ) | UcrQ family | - | Family |
AB [auth AH], LB [auth Ah] | PF02320 | Ubiquinol-cytochrome C reductase hinge protein (UCR_hinge) | Ubiquinol-cytochrome C reductase hinge protein | - | Family |
CB [auth AJ], MB [auth Aj] | PF05365 | Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like (UCR_UQCRX_QCR9) | Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like | - | Family |
PF22461 | SLBB domain (SLBB_2) | SLBB domain | This entry represents a set of SLBB domains [5]. | Domain | |
PF01512 | Nuo51 FMN-binding domain (Complex1_51K) | Respiratory-chain NADH dehydrogenase 51 Kd subunit | - | Family | |
PF10589 | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S) | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | - | Domain | |
PF00384 | Molybdopterin oxidoreductase (Molybdopterin) | Molybdopterin oxidoreductase | - | Family | |
PF22151 | NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain (NDSU1_4Fe-4S) | NADH-ubiquinone oxidoreductase NDSU1/NuoG-like, 4Fe-4S domain | This entry represents the 4Fe-4S domain of NADH-ubiquinone oxidoreductase NDUFS1 from mammals and NuoG from bacteria, which are part of respiratory chain complex I [1-5]. | Domain | |
PF13510 | 2Fe-2S iron-sulfur cluster binding domain (Fer2_4) | 2Fe-2S iron-sulfur cluster binding domain | The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. Th ... | Domain | |
PF22117 | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain (Nqo3_Fer4) | NADH-quinone oxidoreductase subunit 3, ferredoxin-like domain | NADH-quinone oxidoreductase subunit 3 (Nqo3) is a component of respiratory complex I. This protein is located at the peripheral arm of the complex and consists of multiple domains. This entry represents the second ferredoxin-like domain which contain ... | Domain | |
PF09326 | NADH-ubiquinone oxidoreductase subunit G, C-terminal (NADH_dhqG_C) | NADH-ubiquinone oxidoreductase subunit G, C-terminal | - | Family | |
PF10588 | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region (NADH-G_4Fe-4S_3) | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | - | Domain | |
PF00146 | NADH dehydrogenase (NADHdh) | NADH dehydrogenase | - | Family | |
PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |