8R0I

Pseudomonas aeruginosa FabF C164A in complex with 3-amino-N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)benzamide


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelOtherIn-house determined apo structure

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2980.24M ammonium formate and 35% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.141.59

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 101.018α = 90
b = 103.667β = 90
c = 141.315γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 9M2023-09-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.8731ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5172.351000.99810.86.8115834
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.511.5498.50.2935.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.5172.349115789575799.8950.1940.19160.23630.804
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.4710.620.851
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.242
r_dihedral_angle_3_deg15.65
r_dihedral_angle_2_deg14.619
r_lrange_other7.208
r_lrange_it7.206
r_dihedral_angle_1_deg6.813
r_scangle_it6.57
r_scangle_other6.569
r_scbond_it4.764
r_scbond_other4.763
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg17.242
r_dihedral_angle_3_deg15.65
r_dihedral_angle_2_deg14.619
r_lrange_other7.208
r_lrange_it7.206
r_dihedral_angle_1_deg6.813
r_scangle_it6.57
r_scangle_other6.569
r_scbond_it4.764
r_scbond_other4.763
r_mcangle_it4.476
r_mcangle_other4.476
r_mcbond_other3.724
r_mcbond_it3.723
r_angle_refined_deg1.868
r_angle_other_deg0.734
r_nbd_refined0.208
r_nbtor_refined0.174
r_symmetry_nbd_other0.17
r_xyhbond_nbd_refined0.14
r_nbd_other0.127
r_symmetry_nbd_refined0.108
r_chiral_restr0.105
r_symmetry_xyhbond_nbd_refined0.093
r_symmetry_xyhbond_nbd_other0.084
r_symmetry_nbtor_other0.077
r_ncsr_local_group_10.066
r_dihedral_angle_other_2_deg0.024
r_bond_refined_d0.013
r_gen_planes_refined0.012
r_bond_other_d0.003
r_gen_planes_other0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6060
Nucleic Acid Atoms
Solvent Atoms280
Heterogen Atoms74

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
DIALSdata scaling
PHASERphasing