3DTU
TRD: TRIDECANE
TRD is a Ligand Of Interest in 3DTU designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with same target (top 5) |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
3DTU_TRD_D_7 | 47% | 81% | 0.148 | 0.885 | 0.24 | 0.58 | - | - | 2 | 0 | 100% | 1 |
3DTU_TRD_A_1506 | 40% | 84% | 0.177 | 0.887 | 0.24 | 0.52 | - | - | 3 | 0 | 100% | 1 |
3DTU_TRD_D_288 | 27% | 87% | 0.19 | 0.89 | 0.24 | 0.44 | - | - | 0 | 0 | 69% | 0.6923 |
3DTU_TRD_C_577 | 24% | 86% | 0.18 | 0.805 | 0.29 | 0.42 | - | - | 1 | 0 | 100% | 1 |
3DTU_TRD_A_1504 | 23% | 85% | 0.235 | 0.861 | 0.28 | 0.45 | - | - | 4 | 0 | 100% | 1 |
3DTU_TRD_B_1023 | 22% | 87% | 0.181 | 0.855 | 0.25 | 0.45 | - | - | 1 | 0 | 69% | 0.6923 |
3DTU_TRD_C_584 | 15% | 87% | 0.208 | 0.855 | 0.1 | 0.58 | - | - | 12 | 0 | 54% | 0.5385 |
3DTU_TRD_C_578 | 14% | 87% | 0.219 | 0.802 | 0.3 | 0.39 | - | - | 0 | 0 | 85% | 0.8462 |
3DTU_TRD_B_1031 | 13% | 89% | 0.231 | 0.827 | 0.28 | 0.37 | - | - | 0 | 0 | 69% | 0.6923 |
3DTU_TRD_D_12 | 13% | 87% | 0.289 | 0.857 | 0.27 | 0.41 | - | - | 0 | 0 | 85% | 0.6346 |
3DTU_TRD_B_1012 | 12% | 87% | 0.255 | 0.842 | 0.26 | 0.43 | - | - | 0 | 0 | 69% | 0.6923 |
3DTU_TRD_A_1010 | 11% | 84% | 0.308 | 0.857 | 0.25 | 0.51 | - | - | 0 | 0 | 85% | 0.6346 |
3DTU_TRD_A_1009 | 10% | 89% | 0.235 | 0.827 | 0.23 | 0.41 | - | - | 0 | 0 | 54% | 0.5385 |
3DTU_TRD_C_583 | 10% | 88% | 0.26 | 0.842 | 0.22 | 0.45 | - | - | 0 | 0 | 54% | 0.5385 |
3DTU_TRD_D_23 | 6% | 88% | 0.294 | 0.816 | 0.22 | 0.44 | - | - | 0 | 0 | 54% | 0.4038 |
3DTU_TRD_A_1014 | 5% | 88% | 0.391 | 0.894 | 0.22 | 0.43 | - | - | 0 | 0 | 54% | 0.4038 |
3DTU_TRD_C_579 | 4% | 91% | 0.307 | 0.781 | 0.26 | 0.31 | - | - | 0 | 0 | 54% | 0.5385 |
3DTU_TRD_C_580 | 4% | 87% | 0.36 | 0.802 | 0.25 | 0.45 | - | - | 0 | 0 | 69% | 0.5192 |
3DTU_TRD_A_1013 | 3% | 90% | 0.3 | 0.712 | 0.28 | 0.31 | - | - | 0 | 0 | 54% | 0.5385 |
3DTU_TRD_C_582 | 2% | 89% | 0.346 | 0.738 | 0.25 | 0.39 | - | - | 0 | 0 | 54% | 0.4038 |
3DTU_TRD_A_1505 | 2% | 85% | 0.392 | 0.726 | 0.26 | 0.47 | - | - | 0 | 0 | 85% | 0.6346 |
3DTU_TRD_A_1015 | 2% | 83% | 0.394 | 0.702 | 0.27 | 0.5 | - | - | 0 | 0 | 85% | 0.6346 |
3DTU_TRD_C_581 | 2% | 83% | 0.423 | 0.73 | 0.27 | 0.5 | - | - | 0 | 0 | 85% | 0.6346 |
6PW0_TRD_D_302 | 43% | 73% | 0.196 | 0.921 | 0.12 | 0.9 | - | - | 0 | 0 | 100% | 1 |
6PW1_TRD_D_301 | 42% | 76% | 0.141 | 0.913 | 0.12 | 0.81 | - | - | 0 | 0 | 69% | 0.6923 |
2GSM_TRD_A_5007 | 41% | 85% | 0.15 | 0.862 | 0.22 | 0.51 | - | - | 2 | 0 | 100% | 1 |
3FYE_TRD_D_1007 | 29% | 81% | 0.221 | 0.881 | 0.23 | 0.59 | - | - | 1 | 0 | 100% | 1 |
3OM3_TRD_C_3 | 28% | 82% | 0.226 | 0.878 | 0.27 | 0.53 | - | - | 1 | 0 | 100% | 1 |
4ZR1_TRD_A_410 | 49% | 75% | 0.18 | 0.926 | 0.12 | 0.84 | - | - | 1 | 0 | 100% | 1 |
6LPK_TRD_A_2422 | 41% | 98% | 0.14 | 0.853 | 0.14 | 0.14 | - | - | 0 | 0 | 100% | 1 |
6LPJ_TRD_A_2422 | 38% | 98% | 0.154 | 0.855 | 0.13 | 0.16 | - | - | 0 | 0 | 100% | 1 |