RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Gautham, N."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 49 Structures.

Refinements

Structure Determination Methodology

experimental (49)

Scientific Name of Source Organism

	synthetic construct (11)
	Candida parapsilosis (1)
	Sus scrofa (1)

Taxonomy

	other sequences (11)
	Eukaryota (2)

Experimental Method

X-RAY DIFFRACTION (49)

Polymer Entity Type

	DNA (47)
	Protein (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (25)
	2.0 - 2.5 (8)
	2.5 - 3.0 (13)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (4)
	2005 - 2009 (10)
	2010 - 2014 (20)
	2015 - 2019 (10)

Enzyme Classification Name

	Hydrolases (1)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (1)
	Cyclic (1)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 25 of 49 Structures

Page 1 of 2

Sort by

Explore in 3D

180D \| pdb_0000180d	Download File View File

SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG)

Sadasivan, C., Gautham, N.

(1995) J Mol Biology 248: 918-930

Released	1995-07-19
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'-D(CPGPCPAPCPG)-3') (nucleic acid) DNA (5'-D(CPGPTPGPCPG)-3') (nucleic acid)

Explore in 3D

181D \| pdb_0000181d	Download File View File

SEQUENCE-DEPENDENT MICROHETEROGENEITY OF Z-DNA: THE CRYSTAL AND MOLECULAR STRUCTURES OF D(CACGCG).D(CGCGTG) AND D(CGCACG).D(CGTGCG)

Sadasivan, C., Gautham, N.

(1995) J Mol Biology 248: 918-930

Released	1995-07-19
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	DNA (5'-D(CPAPCPGPCPG)-3') (nucleic acid) DNA (5'-D(CPGPCPGPTPG)-3') (nucleic acid)

Explore in 3D

1LJX \| pdb_00001ljx	Download File View File

THE STRUCTURE OF D(TPGPCPGPCPA)2 AT 293K: COMPARISON OF THE EFFECT OF SEQUENCE AND TEMPERATURE

Thiyagarajan, S., Satheesh Kumar, P., Rajan, S.S., Gautham, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1381-1384

Released	2002-05-03
Method	X-RAY DIFFRACTION 1.64 Å
Macromolecule	5'-D(TPGPCPGPCPA)-3' (nucleic acid)
Unique Ligands	MG

Explore in 3D

1QQU \| pdb_00001qqu	Download File View File

CRYSTAL STRUCTURE OF PORCINE BETA TRYPSIN WITH BOUND ACETATE ION

Johnson, A., Gautham, N., Pattabhi, V.

(1999) Biochim Biophys Acta 1435: 7-21

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Sus scrofa
Macromolecule	BETA TRYPSIN (protein)
Unique Ligands	ACT, CA

Explore in 3D

1XA2 \| pdb_00001xa2	Download File View File

Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA).d(TGCGCG) in two crystal forms

Thiyagarajan, S., Rajan, S.S., Gautham, N.

(2004) Nucleic Acids Res 32: 5945-5953

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.71 Å
Macromolecule	5'-D(CPGPCPGPCPA)-3' (nucleic acid) 5'-D(TPGPCPGPCPG)-3' (nucleic acid)
Unique Ligands	NCO

Explore in 3D

1XAM \| pdb_00001xam	Download File View File

Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms.

Thiyagarajan, S., Rajan, S.S., Gautham, N.

(2004) Nucleic Acids Res 32: 5945-5953

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.86 Å
Macromolecule	CGCGCA (nucleic acid) TG (nucleic acid) TGCGCG (nucleic acid)
Unique Ligands	NCO

Explore in 3D

239D \| pdb_0000239d	Download File View File

POLYMORPHISM IN LEFT HANDED DNA: THE CRYSTAL STRUCTURE OF D(CCCGGG)2

Karthe, P., Krishnaswamy, S., Gautham, N.

(1996) To be published

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.05 Å
Macromolecule	DNA (5'-D(CPCPCPGPGPG)-3') (nucleic acid)

Explore in 3D

240D \| pdb_0000240d	Download File View File

EFFECT OF END BASE STEPS ON DNA FORM: CRYSTAL STRUCTURE OF THE A-DNA DECAMER D(CCGGGCCCGG)

Champion, D., Kumar, C.S., Ramakrishnan, B., Gautham, N., Viswamitra, M.A.

To be published

Released	1996-06-20
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(CPCPGPGPGPCPCPCPGPG)-3') (nucleic acid)

Explore in 3D

2HTO \| pdb_00002hto	Download File View File

Ruthenium hexammine ion interactions with Z-DNA

Bharanidharan, D., Thiyagarajan, S., Gautham, N.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 1008-1013

Released	2006-08-08
Method	X-RAY DIFFRACTION 1.54 Å
Macromolecule	DNA (5'-D(DCPDGPDCPDGPDCPDA)-3') (nucleic acid) DNA (5'-D(DTPDGPDCPDGPDCPDG)-3') (nucleic acid)
Unique Ligands	NRU

Explore in 3D

2HTT \| pdb_00002htt	Download File View File

Ruthenium Hexammine ion interactions with Z-DNA

Bharanidharan, D., Thiyagarajan, S., Gautham, N.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 1008-1013

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.6 Å
Macromolecule	DNA (5'-D(DCPDGPDCPDGPDCPDA)-3') (nucleic acid) DNA (5'-D(DTPDGPDCPDGPDCPDG)-3') (nucleic acid) DNA (5'-D(PDTPDG)-3') (nucleic acid)
Unique Ligands	NRU

Explore in 3D

351D \| pdb_0000351d	Download File View File

X-RAY CRYSTAL STRUCTURES OF THE HEXAMER DCACGCG: CRYSTALS GROWN IN THE PRESENCE OF RUTHENIUM (II) HEXAMMINE CHLORIDE

Karthe, P., Gautham, N.

(1998) Acta Crystallogr D Biol Crystallogr 54: 501-509

Released	1997-09-30
Method	X-RAY DIFFRACTION 1.64 Å
Macromolecule	DNA (5'-D(CPAPCPGPCPG)-3') (nucleic acid) DNA (5'-D(CPGPCPGPTPG)-3') (nucleic acid)

Explore in 3D

3E9W \| pdb_00003e9w	Download File View File

X-Ray Crystal Structure of the hexamer DCACACG:Crystal grown in the presence of cobalt(III)hexammine Chloride.

Venkadesh, S., Mandal, P.K., Gautham, N.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 8-13

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.05 Å
Macromolecule	5'-D(CPAPCPAPCPG)-3' (nucleic acid) 5'-D(CPGPTPGPTPG)-3' (nucleic acid)

Explore in 3D

3F8O \| pdb_00003f8o	Download File View File

Structure of d(CACGCG).d(CGCGTG) with low concentration of PdCl2

Mandal, P.K., Venkadesh, S., Gautham, N.

To be published

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.72 Å
Macromolecule	DNA (5'-D(DCPDAPDCPDGPDCPDG)-3') (nucleic acid) DNA (5'-D(DCPDGPDCPDGPDTPDG)-3') (nucleic acid)

Explore in 3D

3FQ5 \| pdb_00003fq5	Download File View File

Crystal Structure of d(CACGCG).d(CGCGTG) with 10mM MnCl2

Venkadesh, S., Kannan, R., Mandal, P.K., Gautham, N.

To be published

Released	2009-02-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	synthetic construct
Macromolecule	5'-D(CPAPCPGPCPG)-3' (nucleic acid) 5'-D(CPGPCPGPTPG)-3' (nucleic acid)
Unique Ligands	MN

Explore in 3D

3FQB \| pdb_00003fqb	Download File View File

Barium interactions with Z-DNA

Mandal, P.K., Venkadesh, S., Vinayak, N., Gautham, N.

To be published

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.67 Å
Macromolecule	5'-D(CPAPCPGPCPG)-3' (nucleic acid) 5'-D(CPGPCPGPTPG)-3' (nucleic acid)
Unique Ligands	BA