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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Christov, P.P."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (22)
	Saccharolobus solfataricus P2 (13)
	synthetic construct (6)
	Mus musculus (1)

Taxonomy

	Eukaryota (23)
	Archaea (13)
	other sequences (6)

Experimental Method

X-RAY DIFFRACTION (36)

Polymer Entity Type

	Protein (36)
	DNA (16)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (13)
	2.5 - 3.0 (11)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (14)
	2015 - 2019 (10)
	2020 - 2024 (12)

Enzyme Classification Name

	Transferases (16)
	Oxidoreductases (2)
	Hydrolases (1)
	Lyases (1)

Symmetry Type

	Asymmetric (21)
	Dihedral (8)
	Cyclic (7)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Artifacts (5)
	Alpha and beta proteins (a/b) (2)
	All beta proteins (5)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (4)

AllSelected

1 to 25 of 36 Structures

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Explore in 3D

3T5H \| pdb_00003t5h	Download File View File

Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 13-mer) with Dpo4 and incoming dDGT

Banerjee, S., Christov, P.P., Kozekova, A., Rizzo, C.J., Stone, M.P.

(2012) Chem Res Toxicol 25: 422-435

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CPAPCP(HN1)PGPAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPC)-3') (nucleic acid)
Unique Ligands	CA, DGT

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3T5J \| pdb_00003t5j	Download File View File

Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 13-mer) with Dpo4 and incoming dDTP

Banerjee, S., Christov, P.P., Kozekova, A., Rizzo, C.J., Stone, M.P.

(2012) Chem Res Toxicol 25: 422-435

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CPAPTP(HN1)PGPAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPC)-3') (nucleic acid)
Unique Ligands	CA, DTP

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3T5K \| pdb_00003t5k	Download File View File

Ternary complex of HNE Adduct modified DNA (5'-TXG-3' vs 14-mer) with Dpo4 and incoming dDTP

Banerjee, S., Christov, P.P., Kozekova, A., Rizzo, C.J., Stone, M.P.

(2012) Chem Res Toxicol 25: 422-435

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CPAPTP(HN0)PGPAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DTP

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3T5L \| pdb_00003t5l	Download File View File

Ternary complex of HNE Adduct modified DNA (5'-CXG-3' vs 14-mer) with Dpo4 and incoming dDGT

Banerjee, S., Christov, P.P., Kozekova, A., Rizzo, C.J., Stone, M.P.

(2012) Chem Res Toxicol 25: 422-435

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(CPAPCP(HN0)PGPAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DGT

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3V6H \| pdb_00003v6h	Download File View File

Replication of N2,3-Ethenoguanine by DNA Polymerases

Zhao, L.

(2012) Angew Chem Int Ed Engl 51: 5466-5469

Released	2012-04-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGGPGPGPAPAPGPGPAPTPTP(DOC))-3') (nucleic acid) DNA (5'-D(TPCPAPCP(EFG)PGPAPAPTPCPCPTPTPCPCPCPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DCP, MG

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3V6J \| pdb_00003v6j	Download File View File

Replication of N2,3-Ethenoguanine by DNA Polymerases

Zhao, L.

(2012) Angew Chem Int Ed Engl 51: 5466-5469

Released	2012-04-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPGPAPAPGPGPAPTPTP(DOC))-3') (nucleic acid) DNA (5'-D(TPCPAPTP(EFG)PGPAPAPTPCPCPTPTPCPCPCP*C)-3') (nucleic acid)
Unique Ligands	DCP, MG

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3V6K \| pdb_00003v6k	Download File View File

Replication of N2,3-Ethenoguanine by DNA Polymerases

Zhao, L.

(2012) Angew Chem Int Ed Engl 51: 5466-5469

Released	2012-04-25
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(TPCPAPCP(EFG)PGPAPAPTPCPCPTPTPC)-3') (nucleic acid) DNA (5'-D(PGPAPAPGPGPAPTPTPCP(2DT))-3') (nucleic acid)
Unique Ligands	CA, MG, NA

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3W0F \| pdb_00003w0f	Download File View File

Crystal structure of mouse Endonuclease VIII-LIKE 3 (mNEIL3)

Liu, M., Imamura, K., Averill, A.M., Wallace, S.S., Doublie, S.

(2013) Structure 21: 247-256

Released	2013-01-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Endonuclease 8-like 3 (protein)
Unique Ligands	IOD, ZN

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4FS1 \| pdb_00004fs1	Download File View File

Base pairing mechanism of N2,3-ethenoguanine with dTTP by human polymerase iota

Zhao, L.

(2012) J Biological Chem 287: 35516-35526

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase iota (protein) DNA 5'-D(TPCPTP(EFG)PGPGPGPTPCPCPTPAPGPGPAPCPCP(DOC))-3' (nucleic acid)
Unique Ligands	MG, NA, TTP

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4FS2 \| pdb_00004fs2	Download File View File

Base pairing mechanism of N2,3-ethenoguanine with dCTP by human polymerase iota

Zhao, L.

(2012) J Biological Chem 287: 35516-35526

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase iota (protein) DNA (5'-D(TPCPTP(EFG)PGPGPGPTPCPCPTPAPGPGPAPCPCP(DOC))-3') (nucleic acid)
Unique Ligands	DCP, MG, NA

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4JUZ \| pdb_00004juz	Download File View File

Ternary complex of gamma-OHPDG adduct modified dna (zero primer) with dna polymerase iv and incoming dgtp

Banerjee, S., Shanmugam, G., Stone, M.P.

(2013) Chem Res Toxicol 26: 1348-1360

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPCPC)-3') (nucleic acid) DNA (5'-D(PCP(KAG)PGPAPAPTPCPCPTPTPCPCPCPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DGT

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4JV0 \| pdb_00004jv0	Download File View File

Ring-Opening of the -OH-PdG Adduct in Ternary Complexes with the Sulfolobus solfataricus DNA polymerase Dpo4

Banerjee, S., Shanmugam, G., Stone, M.P.

(2013) Chem Res Toxicol 26: 1348-1360

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPCPC)-3') (nucleic acid) DNA (5'-D(PTP(KAG)PGPAPAPTPCPCPTPTPCPCPCPCP*C)-3') (nucleic acid)
Unique Ligands	CA, DTP

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4JV1 \| pdb_00004jv1	Download File View File

Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming dgtp

Banerjee, S., Shanmugam, G., Stone, M.P.

(2013) Chem Res Toxicol 26: 1348-1360

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPC)-3') (nucleic acid) DNA (5'-D(PCP(HN1)PGPAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid)
Unique Ligands	CA, DGT

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4JV2 \| pdb_00004jv2	Download File View File

Ternary complex of gamma-OHPDG adduct modified dna with dna (-1 primer) polymerase iv and incoming datp

Banerjee, S., Shanmugam, G., Stone, M.P.

(2013) Chem Res Toxicol 26: 1348-1360

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA polymerase IV (protein) DNA (5'-D(GPGPGPGPGPAPAPGPGPAPTPTPC)-3') (nucleic acid) DNA (5'-D(PTP(HN1)PGPAPAPTPCPCPTPTPCPCPCPCPC)-3') (nucleic acid)
Unique Ligands	CA, DTP

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4RU9 \| pdb_00004ru9	Download File View File

Crystal structure of human DNA polymerase eta inserting dCMPNPP opposite a MeFapy-dG adducted DNA template

Patra, A., Egli, M.

(2015) J Am Chem Soc 137: 7011-7014

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA polymerase eta (protein) Nucleic acids Primar: AGCGTCAT (nucleic acid) Nucleic acids Template: CAT(MF7)ATGACGCT (nucleic acid)
Unique Ligands	0KX, MG

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4RUA \| pdb_00004rua	Download File View File

Crystal structure of Y-family DNA polymerase Dpo4 bypassing a MeFapy-dG adduct

Patra, A., Banerjee, S., Stone, M.P., Egli, M.

(2015) J Am Chem Soc 137: 7011-7014

Released	2015-08-05
Method	X-RAY DIFFRACTION 3.07 Å
Organisms	Saccharolobus solfataricus P2 synthetic construct
Macromolecule	DNA polymerase IV (protein) Nucleic acids Primar: GGGGGAAGGATTC (nucleic acid) Nucleic acids Template: TCAT(MF7)GAATCCTTCCCCC (nucleic acid)
Unique Ligands	CA, DTP

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4RUC \| pdb_00004ruc	Download File View File

Crystal structure of Y-family DNA polymerase Dpo4 extending from a MeFapy-dG:dC pair

Patra, A., Banerjee, S., Stone, M.P., Egli, M.

(2015) J Am Chem Soc 137: 7011-7014

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharolobus solfataricus P2 synthetic construct
Macromolecule	DNA polymerase IV (protein) Nucleic acids Primar: GGGGGAAGGATTAC (nucleic acid) Nucleic acids Template: TCAT(MF7)TAATCCTTCCCCC (nucleic acid)
Unique Ligands	CA, DTP

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6NE5 \| pdb_00006ne5	Download File View File

Discovery of Potent Myeloid Cell Leukemia-1 (Mcl-1) Inhibitors that Demonstrate in vivo Activity in Mouse Xenograft Models of Human Cancer

Zhao, B.

(2019) J Med Chem 62: 3971-3988

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Induced myeloid leukemia cell differentiation protein Mcl-1 (protein)
Unique Ligands	KJP

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6NM7 \| pdb_00006nm7	Download File View File

PD-L1 IgV domain bound to fragment

Perry, E., Zhao, B.

(2019) Bioorg Med Chem Lett 29: 786-790

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.426 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death 1 ligand 1 (protein)
Unique Ligands	22L

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6NM8 \| pdb_00006nm8	Download File View File

IgV-V76T BMS compound 105

Perry, E., Zhao, B., Fesik, S.

(2019) Bioorg Med Chem Lett 29: 786-790

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.792 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death 1 ligand 1 (protein)
Unique Ligands	KSD

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6NNV \| pdb_00006nnv	Download File View File

PD-L1 IgV domain complex with macro-cyclic peptide

Zhao, B., Perry, E.

(2019) Bioorg Med Chem Lett 29: 786-790

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Programmed cell death 1 ligand 1 (protein) macrocyclic peptide (protein)

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6NOJ \| pdb_00006noj	Download File View File

PD-L1 IgV domain V76T with fragment

Zhao, B., Perry, E.

(2019) Bioorg Med Chem Lett 29: 786-790

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death 1 ligand 1 (protein)
Unique Ligands	KW7

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6NOS \| pdb_00006nos	Download File View File

PD-L1 IgV domain V76T with fragment

Zhao, B., Perry, E.

(2019) Bioorg Med Chem Lett 29: 786-790

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.701 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death 1 ligand 1 (protein)
Unique Ligands	KWA

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6NP9 \| pdb_00006np9	Download File View File

PD-L1 IgV domain V76T with fragment

Zhao, B., Perry, E.

(2019) Bioorg Med Chem Lett 29: 786-790

Released	2019-02-20
Method	X-RAY DIFFRACTION 1.27 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death 1 ligand 1 (protein)
Unique Ligands	SO4

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6Q0D \| pdb_00006q0d	Download File View File

CRYSTAL STRUCTURE OF LDHA IN COMPLEX WITH COMPOUND NCGC00384414-01 AT 2.05 A RESOLUTION

Dranow, D.M., Davies, D.R.

(2020) J Med Chem 63: 10984-11011

Released	2020-09-23
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	L-lactate dehydrogenase A chain (protein)
Unique Ligands	GOL, NAI, P8M, PO4

1 to 25 of 36 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3T5H | pdb_00003t5h

3T5J | pdb_00003t5j

3T5K | pdb_00003t5k

3T5L | pdb_00003t5l

3V6H | pdb_00003v6h

3V6J | pdb_00003v6j

3V6K | pdb_00003v6k

3W0F | pdb_00003w0f

4FS1 | pdb_00004fs1

4FS2 | pdb_00004fs2

4JUZ | pdb_00004juz

4JV0 | pdb_00004jv0

4JV1 | pdb_00004jv1

4JV2 | pdb_00004jv2

4RU9 | pdb_00004ru9

4RUA | pdb_00004rua

4RUC | pdb_00004ruc

6NE5 | pdb_00006ne5

6NM7 | pdb_00006nm7

6NM8 | pdb_00006nm8

6NNV | pdb_00006nnv

6NOJ | pdb_00006noj

6NOS | pdb_00006nos

6NP9 | pdb_00006np9

6Q0D | pdb_00006q0d