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233,249 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Thiyagarajan, S."

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Search Summary

This query matches 13 Structures.

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Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Streptococcus agalactiae serogroup III (3)
	Acidithiobacillus ferrooxidans (1)
	Corynebacterium glutamicum ATCC 13032 (1)
	Escherichia coli K-12 (1)
	Staphylococcus aureus (1)
	Staphylococcus phage GRCS (1)
	synthetic construct (1)

Taxonomy

	Bacteria (7)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

	DNA (7)
	Protein (7)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (4)
	2010 - 2014 (3)
	2015 - 2019 (2)
	2025 - 2029 (1)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (1)

SCOP Classification

	All alpha proteins (3)
	Alpha and beta proteins (a/b) (2)

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1 to 13 of 13 Structures

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1LJX \| pdb_00001ljx	Download File View File

THE STRUCTURE OF D(TPGPCPGPCPA)2 AT 293K: COMPARISON OF THE EFFECT OF SEQUENCE AND TEMPERATURE

Thiyagarajan, S., Satheesh Kumar, P., Rajan, S.S., Gautham, N.

(2002) Acta Crystallogr D Biol Crystallogr 58: 1381-1384

Released	2002-05-03
Method	X-RAY DIFFRACTION 1.64 Å
Macromolecule	5'-D(TPGPCPGPCPA)-3' (nucleic acid)
Unique Ligands	MG

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1XA2 \| pdb_00001xa2	Download File View File

Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA).d(TGCGCG) in two crystal forms

Thiyagarajan, S., Rajan, S.S., Gautham, N.

(2004) Nucleic Acids Res 32: 5945-5953

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.71 Å
Macromolecule	5'-D(CPGPCPGPCPA)-3' (nucleic acid) 5'-D(TPGPCPGPCPG)-3' (nucleic acid)
Unique Ligands	NCO

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1XAM \| pdb_00001xam	Download File View File

Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms.

Thiyagarajan, S., Rajan, S.S., Gautham, N.

(2004) Nucleic Acids Res 32: 5945-5953

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.86 Å
Macromolecule	CGCGCA (nucleic acid) TG (nucleic acid) TGCGCG (nucleic acid)
Unique Ligands	NCO

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2F8W \| pdb_00002f8w	Download File View File

Crystal structure of d(CACGTG)2

Narayana, N., Shamala, N., Ganesh, K.N., Viswamitra, M.A.

(2006) Biochemistry 45: 1200-1211

Released	2006-01-31
Method	X-RAY DIFFRACTION 1.2 Å
Macromolecule	5'-D(CPAPCPGPTPG)-3' (nucleic acid)
Unique Ligands	13D, SPM

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2HTO \| pdb_00002hto	Download File View File

Ruthenium hexammine ion interactions with Z-DNA

Bharanidharan, D., Thiyagarajan, S., Gautham, N.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 1008-1013

Released	2006-08-08
Method	X-RAY DIFFRACTION 1.54 Å
Macromolecule	DNA (5'-D(DCPDGPDCPDGPDCPDA)-3') (nucleic acid) DNA (5'-D(DTPDGPDCPDGPDCPDG)-3') (nucleic acid)
Unique Ligands	NRU

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2HTT \| pdb_00002htt	Download File View File

Ruthenium Hexammine ion interactions with Z-DNA

Bharanidharan, D., Thiyagarajan, S., Gautham, N.

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 1008-1013

Released	2006-08-08
Method	X-RAY DIFFRACTION 2.6 Å
Macromolecule	DNA (5'-D(DCPDGPDCPDGPDCPDA)-3') (nucleic acid) DNA (5'-D(DTPDGPDCPDGPDCPDG)-3') (nucleic acid) DNA (5'-D(PDTPDG)-3') (nucleic acid)
Unique Ligands	NRU

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3F72 \| pdb_00003f72	Download File View File

Crystal Structure of the Staphylococcus aureus pI258 CadC Metal Binding Site 2 Mutant

Kandegedara, A., Thiyagarajan, S., Kondapalli, K.C., Stemmler, T.L., Rosen, B.P.

(2009) J Biological Chem 284: 14958-14965

Released	2009-04-07
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Staphylococcus aureus
Macromolecule	Cadmium efflux system accessory protein (protein)
Unique Ligands	NA

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3KEO \| pdb_00003keo	Download File View File

Crystal Structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptococcus agalactiae serogroup III
Macromolecule	Redox-sensing transcriptional repressor rex (protein)
Unique Ligands	CL, MG, NAD

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3KEQ \| pdb_00003keq	Download File View File

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus agalactiae serogroup III
Macromolecule	Redox-sensing transcriptional repressor rex (protein)
Unique Ligands	NAD

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3KET \| pdb_00003ket	Download File View File

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator

Thiyagarajan, S., Logan, D., von Wachenfeldt, C.

(2021) PLoS Pathog 17: e1009791-e1009791

Released	2010-11-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus agalactiae serogroup III synthetic construct
Macromolecule	Redox-sensing transcriptional repressor rex (protein) DNA (5'-D(APAPTPTPGPTPGPAPAPAPT)-3') (nucleic acid) DNA (5'-D(PAPTPTPTPCPAPCPAPAPTPT)-3') (nucleic acid)
Unique Ligands	MG, NAD

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6J05 \| pdb_00006j05	Download File View File

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

Prabaharan, C., Kandavelu, P., Packianathan, C., Rosen, P.B., Thiyagarajan, S.

(2019) J Struct Biol 207: 209-217

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Acidithiobacillus ferrooxidans
Macromolecule	Transcriptional regulator ArsR (protein)
Unique Ligands	ARS, NA

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6J0E \| pdb_00006j0e	Download File View File

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

Prabaharan, C., Kandavelu, P., Packianathan, C., Rosen, P.B., Thiyagarajan, S.

(2019) J Struct Biol 207: 209-217

Released	2019-07-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Arsenic responsive repressor ArsR (protein)
Unique Ligands	ARS, MPD

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8XYF \| pdb_00008xyf	Download File View File

Crystal structure of Holo-PlyGRCS, a bacteriophage Endolysin in complex with Cold shock protein C

Padmanabhan, B., Gopinath, K., Harshitha, H.N.

(2025) Proteins 93: 920-933

Released	2025-01-01
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Escherichia coli K-12 Staphylococcus phage GRCS
Macromolecule	Cold shock-like protein CspC (protein) Endolysin (protein)
Unique Ligands	MES

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1LJX | pdb_00001ljx

THE STRUCTURE OF D(TPGPCPGPCPA)2 AT 293K: COMPARISON OF THE EFFECT OF SEQUENCE AND TEMPERATURE

1XA2 | pdb_00001xa2

Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA).d(TGCGCG) in two crystal forms

1XAM | pdb_00001xam

Cobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms.

2F8W | pdb_00002f8w

Crystal structure of d(CACGTG)2

2HTO | pdb_00002hto

Ruthenium hexammine ion interactions with Z-DNA

2HTT | pdb_00002htt

Ruthenium Hexammine ion interactions with Z-DNA

3F72 | pdb_00003f72

Crystal Structure of the Staphylococcus aureus pI258 CadC Metal Binding Site 2 Mutant

3KEO | pdb_00003keo

Crystal Structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

3KEQ | pdb_00003keq

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+

3KET | pdb_00003ket

Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator

6J05 | pdb_00006j05

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

6J0E | pdb_00006j0e

Structures of two ArsR As(III)-responsive repressors: implications for the mechanism of derepression

8XYF | pdb_00008xyf

Crystal structure of Holo-PlyGRCS, a bacteriophage Endolysin in complex with Cold shock protein C

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1LJX | pdb_00001ljx

1XA2 | pdb_00001xa2

1XAM | pdb_00001xam

2F8W | pdb_00002f8w

2HTO | pdb_00002hto

2HTT | pdb_00002htt

3F72 | pdb_00003f72

3KEO | pdb_00003keo

3KEQ | pdb_00003keq

3KET | pdb_00003ket

6J05 | pdb_00006j05

6J0E | pdb_00006j0e

8XYF | pdb_00008xyf