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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Viennet, T."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (13)
	Cylindrospermum stagnale (4)
	Lama glama (2)
	Pseudomonas aeruginosa PAO1 (2)
	Cylindrospermum stagnale BEA 0605B (1)
	Saccharomyces cerevisiae (1)

Taxonomy

	Eukaryota (13)
	Bacteria (7)

Experimental Method

	X-RAY DIFFRACTION (15)
	SOLUTION NMR (3)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (20)
	DNA (2)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (4)
	2.5 - 3.0 (4)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (2)
	2020 - 2024 (18)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (4)

Symmetry Type

	Asymmetric (20)
	Cyclic (1)

AllSelected

1 to 20 of 20 Structures

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5OVM \| pdb_00005ovm	Download File View File

Solution structure of lipase binding domain LID1 of foldase from Pseudomonas aeruginosa

Viegas, A., Jaeger, K.-E., Etzkorn, M., Gohlke, H., Verma, N., Dollinger, P., Kovacic, F.

(2020) Sci Rep 10: 3578-3578

Released	2018-12-12
Method	SOLUTION NMR
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Lipase chaperone (protein)

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6GSF \| pdb_00006gsf	Download File View File

Solution structure of lipase binding domain LID1 of foldase from Pseudomonas aeruginosa

Viegas, A., Jaeger, K.-E., Etzkorn, M., Gohlke, H., Verma, N., Dollinger, P., Kovacic, F.

(2020) Sci Rep 10: 3578-3578

Released	2018-12-26
Method	SOLUTION NMR
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Lipase chaperone (protein)

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6U9Q \| pdb_00006u9q	Download File View File

Crystal Structure Analysis of DNA-BCL11A Znf domain complex

Seo, H.-S., Dhe-Paganon, S.

(2024) Structure

Released	2020-09-16
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	B-cell lymphoma/leukemia 11A (protein) DNA3 (nucleic acid) DNA5 (nucleic acid)
Unique Ligands	MG, PO4, ZN

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7JTX \| pdb_00007jtx	Download File View File

the structural basis of PTEN regulation by multi-site phosphorylation

Park, E., Dempsey, D.R., Cole, P.

(2021) Nat Struct Mol Biol 28: 858-868

Released	2021-09-01
Method	X-RAY DIFFRACTION 3.23 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (protein)

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7JUK \| pdb_00007juk	Download File View File

Crystal structure of PTEN with a tetra-phosphorylated tail (4p-crPTEN-13sp-T2, SDTTDSDPENEG)

Dempsey, D., Phan, K., Cole, P., Gabelli, S.B.

(2021) Nat Struct Mol Biol 28: 858-868

Released	2021-10-13
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (protein)
Unique Ligands	PO4

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7JUL \| pdb_00007jul	Download File View File

Crystal structure of non phosphorylated PTEN (n-crPTEN-13sp-T1, SDTTDSDPENEG)

Dempsey, D., Phan, K., Cole, P., Gabelli, S.B.

(2021) Nat Struct Mol Biol 28: 858-868

Released	2021-08-11
Method	X-RAY DIFFRACTION 2.53 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (protein)

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7JVX \| pdb_00007jvx	Download File View File

Crystal structure of PTEN (aa 7-353 followed by spacer TGGGSGGTGGGSGGTGGGCY ligated to peptide pSDpTpTDpSDPENEPFDED)

Dempsey, D., Phan, K., Cole, P., Gabelli, S.B.

(2021) Nat Struct Mol Biol 28: 858-868

Released	2021-08-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN (protein)
Unique Ligands	PO4

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7MYX \| pdb_00007myx	Download File View File

Crystal structure of the PH domain (R86A) of Akt1

Bae, H., Park, E., Cole, P.A., Eck, M.J.

(2022) Elife 11:

Released	2022-11-09
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Homo sapiens
Macromolecule	RAC-alpha serine/threonine-protein kinase (protein)

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7U20 \| pdb_00007u20	Download File View File

Crystal structure of human METTL1 and WDR4 complex

Li, J., Nowak, R.P., Fischer, E.S., Gregory, R.

(2023) Nature 613: 391-397

Released	2022-12-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	tRNA (guanine-N(7)-)-methyltransferase (protein) tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 (protein)
Unique Ligands	SO4

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8CAK \| pdb_00008cak	Download File View File

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with M41

Reis, J., Mattevi, A.

(2023) Nat Chem Biol 19: 1540-1550

Released	2023-09-27
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Cylindrospermum stagnale BEA 0605B
Macromolecule	Putative ferric reductase (protein)
Unique Ligands	DMS, EDO, FAD, U4F

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8CAL \| pdb_00008cal	Download File View File

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with M34

Reis, J., Mattevi, A.

(2023) Nat Chem Biol 19: 1540-1550

Released	2023-09-27
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Cylindrospermum stagnale
Macromolecule	Putative ferric reductase (protein)
Unique Ligands	DMS, FAD, U45

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8CAO \| pdb_00008cao	Download File View File

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with CA24

Reis, J., Mattevi, A.

(2023) Nat Chem Biol 19: 1540-1550

Released	2023-09-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cylindrospermum stagnale
Macromolecule	Putative ferric reductase (protein)
Unique Ligands	EDO, FAD, PEG, U40

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8CAP \| pdb_00008cap	Download File View File

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with CB28

Reis, J., Mattevi, A.

(2023) Nat Chem Biol 19: 1540-1550

Released	2023-09-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cylindrospermum stagnale
Macromolecule	Putative ferric reductase (protein)
Unique Ligands	FAD, U4O

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8CB0 \| pdb_00008cb0	Download File View File

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with M41 and NADP+

Reis, J., Mattevi, A.

(2023) Nat Chem Biol 19: 1540-1550

Released	2023-09-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cylindrospermum stagnale
Macromolecule	Putative ferric reductase (protein)
Unique Ligands	EDO, FAD, NAP, U4F

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8CTH \| pdb_00008cth	Download File View File

Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex

Li, J., Wang, L., Fontana, P., Hunkeler, M., Roy-Burman, S.S., Wu, H., Fishcer, E.S., Gregory, R.I.

(2023) Nature 613: 391-397

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	tRNA (guanine-N(7)-)-methyltransferase (protein) tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 (protein) Phe-tRNA (nucleic acid)
Unique Ligands	SAH

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8CTI \| pdb_00008cti	Download File View File

Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex

Li, J., Wang, L., Fontana, P., Hunkeler, M., Roy-Burman, S.S., Wu, H., Fischer, E.S., Gregory, R.I.

(2023) Nature 613: 391-397

Released	2022-12-07
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	tRNA (guanine-N(7)-)-methyltransferase (protein) tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 (protein) tRNA-Val-TAC-2-1 (nucleic acid)

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8DTN \| pdb_00008dtn	Download File View File

The complex of nanobody 6101 with BCL11A ZF6

Yin, M., Tenglin, K., Zhai, L., Dassama, L.M., Orkin, S.H.

(2023) Proc Natl Acad Sci U S A 120: e2218959120-e2218959120

Released	2023-02-01
Method	X-RAY DIFFRACTION 2.199 Å
Organisms	Homo sapiens Lama glama
Macromolecule	B-cell lymphoma/leukemia 11A (protein) Nanobody 6101 (protein)
Unique Ligands	MG, ZN

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8DTU \| pdb_00008dtu	Download File View File

The complex of nanobody 5344N74D with BCL11A ZF6.

Yin, M., Tenglin, K., Zhai, L., Dassama, L.M., Orkin, S.H.

(2023) Proc Natl Acad Sci U S A 120: e2218959120-e2218959120

Released	2023-02-01
Method	X-RAY DIFFRACTION 2.447 Å
Organisms	Homo sapiens Lama glama
Macromolecule	B-cell lymphoma/leukemia 11A (protein) Nanobody 5344N74D (protein)
Unique Ligands	ZN

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8THO \| pdb_00008tho	Download File View File

Solution structure of the zinc finger repeat domain of BCL11A (ZnF456)

Viennet, T., Yin, M., Orkin, S.H., Arthanari, H.

(2024) Structure 32: 2276-2286.e4

Released	2024-07-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	B-cell lymphoma/leukemia 11A (protein)
Unique Ligands	ZN

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8TLO \| pdb_00008tlo	Download File View File

Crystal Structure Analysis of BCL11A in complex with DNA

Seo, H.-S., Dhe-Paganon, S.

(2024) Structure 32: 2276-2286.e4

Released	2024-08-14
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Homo sapiens
Macromolecule	B-cell lymphoma/leukemia 11A (protein) DNA (5'-D(PCPGPAPCPCPGPCPAPTPTPGPGPTPCPAPAPGPCPG)-3') (nucleic acid) DNA (5'-D(PGPCPTPTPGPAPCPCPAPAPTPGPCPGPGPTPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5OVM | pdb_00005ovm

Solution structure of lipase binding domain LID1 of foldase from Pseudomonas aeruginosa

6GSF | pdb_00006gsf

Solution structure of lipase binding domain LID1 of foldase from Pseudomonas aeruginosa

6U9Q | pdb_00006u9q

Crystal Structure Analysis of DNA-BCL11A Znf domain complex

7JTX | pdb_00007jtx

the structural basis of PTEN regulation by multi-site phosphorylation

7JUK | pdb_00007juk

Crystal structure of PTEN with a tetra-phosphorylated tail (4p-crPTEN-13sp-T2, SDTTDSDPENEG)

7JUL | pdb_00007jul

Crystal structure of non phosphorylated PTEN (n-crPTEN-13sp-T1, SDTTDSDPENEG)

7JVX | pdb_00007jvx

Crystal structure of PTEN (aa 7-353 followed by spacer TGGGSGGTGGGSGGTGGGCY ligated to peptide pSDpTpTDpSDPENEPFDED)

7MYX | pdb_00007myx

Crystal structure of the PH domain (R86A) of Akt1

7U20 | pdb_00007u20

Crystal structure of human METTL1 and WDR4 complex

8CAK | pdb_00008cak

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with M41

8CAL | pdb_00008cal

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with M34

8CAO | pdb_00008cao

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with CA24

8CAP | pdb_00008cap

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with CB28

8CB0 | pdb_00008cb0

Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5) in complex with M41 and NADP+

8CTH | pdb_00008cth

Cryo-EM structure of human METTL1-WDR4-tRNA(Phe) complex

8CTI | pdb_00008cti

Cryo-EM structure of human METTL1-WDR4-tRNA(Val) complex

8DTN | pdb_00008dtn

The complex of nanobody 6101 with BCL11A ZF6

8DTU | pdb_00008dtu

The complex of nanobody 5344N74D with BCL11A ZF6.

8THO | pdb_00008tho

Solution structure of the zinc finger repeat domain of BCL11A (ZnF456)

8TLO | pdb_00008tlo

Crystal Structure Analysis of BCL11A in complex with DNA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5OVM | pdb_00005ovm

6GSF | pdb_00006gsf

6U9Q | pdb_00006u9q

7JTX | pdb_00007jtx

7JUK | pdb_00007juk

7JUL | pdb_00007jul

7JVX | pdb_00007jvx

7MYX | pdb_00007myx

7U20 | pdb_00007u20

8CAK | pdb_00008cak

8CAL | pdb_00008cal

8CAO | pdb_00008cao

8CAP | pdb_00008cap

8CB0 | pdb_00008cb0

8CTH | pdb_00008cth

8CTI | pdb_00008cti

8DTN | pdb_00008dtn

8DTU | pdb_00008dtu

8THO | pdb_00008tho

8TLO | pdb_00008tlo