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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = PPI

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Search Summary

This query matches 62 Structures.

Refinements

Structure Determination Methodology

experimental (62)

Scientific Name of Source Organism

	Homo sapiens (20)
	Mus musculus (4)
	synthetic construct (4)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (3)
	Staphylococcus aureus (3)
	Arabidopsis thaliana (2)
	Pseudogluconobacter saccharoketogenes (2)
	Pseudomonas aeruginosa PAO1 (2)
	Pseudomonas fluorescens (2)
	Androctonus australis hector (1)

More...

Taxonomy

	Bacteria (29)
	Eukaryota (29)
	other sequences (4)
	Riboviria (2)
	Archaea (1)
	Eukaryota (eukaryotes) (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (61)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (62)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (7)
	1.5 - 2.0 (31)
	2.0 - 2.5 (14)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (2)
	2000 - 2004 (5)
	2005 - 2009 (5)
	2010 - 2014 (6)
	2015 - 2019 (22)
	2020 - 2024 (18)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (22)
	Transferases (11)
	Oxidoreductases (9)
	Lyases (3)
	Isomerases (3)

Membrane Protein Annotation

	OPM (3)
	mpstruc (2)
	PDBTM (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (33)
	Cyclic (30)
	Dihedral (3)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (11)
	Alpha and beta proteins (a/b) (12)
	Alpha and beta proteins (a+b) (5)
	All alpha proteins (3)
	Multi-domain proteins (alpha and beta) (1)
	Artifacts (2)
	Small proteins (1)

AllSelected

1 to 25 of 62 Structures

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1A8S \| pdb_00001a8s	Download File View File

CHLOROPEROXIDASE F/PROPIONATE COMPLEX

Hofmann, B., Toelzer, S., Pelletier, I., Altenbuchner, J., Van Pee, K.-H., Hecht, H.-J.

(1998) J Mol Biology 279: 889-900

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas fluorescens
Macromolecule	CHLOROPEROXIDASE F (protein)
Unique Ligands	PPI, SO4

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1ADL \| pdb_00001adl	Download File View File

ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH ARACHIDONIC ACID: X-RAY CRYSTALLOGRAPHIC AND TITRATION CALORIMETRY STUDIES

Lalonde, J.M., Levenson, M., Roe, J.J., Bernlohr, D.A., Banaszak, L.J.

(1994) J Biological Chem 269: 25339-25347

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	ADIPOCYTE LIPID-BINDING PROTEIN (protein)
Unique Ligands	ACD, PPI

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1LIC \| pdb_00001lic	Download File View File

X-RAY CRYSTALLOGRAPHIC STRUCTURES OF ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH PALMITATE AND HEXADECANESULFONIC ACID. PROPERTIES OF CAVITY BINDING SITES.

Lalonde, J.M., Bernlohr, D.A., Banaszak, L.J.

(1994) Biochemistry 33: 4885-4895

Released	1994-04-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	ADIPOCYTE LIPID-BINDING PROTEIN (protein)
Unique Ligands	HDS, PPI

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1LIE \| pdb_00001lie	Download File View File

X-RAY CRYSTALLOGRAPHIC STRUCTURES OF ADIPOCYTE LIPID BINDING PROTEIN COMPLEXED WITH PALMITATE AND HEXADECANESULFONIC ACID. PROPERTIES OF CAVITY BINDING SITES

Lalonde, J.M., Bernlohr, D.A., Banaszak, L.J.

(1994) Biochemistry 33: 4885-4895

Released	1994-04-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	ADIPOCYTE LIPID-BINDING PROTEIN (protein)
Unique Ligands	PLM, PPI

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1SEG \| pdb_00001seg	Download File View File

Crystal structure of a toxin chimera between Lqh-alpha-IT from the scorpion Leiurus quinquestriatus hebraeus and AAH2 from Androctonus australis hector

Karbat, I., Frolow, F., Froy, O., Gilles, N., Cohen, L., Turkov, M., Gordon, D., Gurevitz, M.

(2004) J Biological Chem 279: 31679-31686

Released	2004-08-31
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Androctonus australis hector
Macromolecule	AAH2: LQH-ALPHA-IT (FACE) CHIMERIC TOXIN (protein)
Unique Ligands	NO3, PPI, SO4

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1TU9 \| pdb_00001tu9	Download File View File

Crystal Structure of a Protein PA3967, a Structurally Highly Homologous to a Human Hemoglobin, from Pseudomonas aeruginosa PAO1

Kim, Y., Joachimiak, A., Skarina, T., Egorova, O., Bochkarev, A., Savchenko, A., Edwards, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-08-10
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	hypothetical protein PA3967 (protein)
Unique Ligands	EDO, HEM, PPI

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1UK6 \| pdb_00001uk6	Download File View File

Crystal structure of a meta-cleavage product hydrolase (CumD) complexed with propionate

Fushinobu, S., Jun, S.-Y., Hidaka, M., Nojiri, H., Yamane, H., Shoun, H., Omori, T., Wakagi, T.

(2005) Biosci Biotechnol Biochem 69: 491-498

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase (protein)
Unique Ligands	PPI

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1UUX \| pdb_00001uux	Download File View File

Structure of a molybdopterin-bound cnx1g domain links molybdenum and copper metabolism

Kuper, J., Llamas, A., Hecht, H.J., Mendel, R.R., Schwarz, G.

(2004) Nature 430: 803

Released	2004-08-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Arabidopsis thaliana
Macromolecule	MOLYBDOPTERIN BIOSYNTHESIS CNX1 (protein)
Unique Ligands	CU1, FMT, IMD, MTE, PPI

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1UUY \| pdb_00001uuy	Download File View File

Structure of a molybdopterin-bound cnx1g domain links molybdenum and copper metabolism

Kuper, J., Llamas, A., Hecht, H.J., Mendel, R.R., Schwarz, G.

(2004) Nature 430: 803

Released	2004-08-09
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Arabidopsis thaliana
Macromolecule	MOLYBDOPTERIN BIOSYNTHESIS CNX1 (protein)
Unique Ligands	AMP, CU1, FMT, IMD, MTE, PPI

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2HUB \| pdb_00002hub	Download File View File

Structure of Hen Egg-White Lysozyme Determined from crystals grown in pH 7.5

Frolow, F., Lagziel-Simis, S., Cohen-Hadar, N., Wine, Y., Freeman, A.

To be published

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.201 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	EDO, EPE, FMT, NA, PPI, TAR

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2SFP \| pdb_00002sfp	Download File View File

ALANINE RACEMASE WITH BOUND PROPIONATE INHIBITOR

Morollo, A.A., Petsko, G.A., Ringe, D.

(1999) Biochemistry 38: 3293-3301

Released	1999-02-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	PROTEIN (ALANINE RACEMASE) (protein)
Unique Ligands	PLP, PPI

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2UYP \| pdb_00002uyp	Download File View File

Crystal structure of E. coli TdcF with bound propionate

Burman, J.D., Stevenson, C.E.M., Sawers, R.G., Lawson, D.M.

(2007) BMC Struct Biol 7: 30

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN TDCF (protein)
Unique Ligands	PPI

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3CU8 \| pdb_00003cu8	Download File View File

Impaired binding of 14-3-3 to Raf1 is linked to Noonan and LEOPARD syndrome

Schumacher, B., Weyand, M., Kuhlmann, J., Ottmann, C.

(2010) Mol Cell Biol 30: 4698-4711

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein zeta/delta (protein) RAF proto-oncogene serine/threonine-protein kinase (protein)
Unique Ligands	MG, PPI

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3E5P \| pdb_00003e5p	Download File View File

Crystal structure of alanine racemase from E.faecalis

Hwang, K.Y., Priyadarshi, A., Lee, E.H., Sung, M.W.

(2009) Biochim Biophys Acta 1794: 1030-1040

Released	2009-08-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterococcus faecalis
Macromolecule	Alanine racemase (protein)
Unique Ligands	2PE, EPE, PLP, PPI

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3KB6 \| pdb_00003kb6	Download File View File

Crystal structure of D-Lactate dehydrogenase from aquifex aeolicus complexed with NAD and Lactic acid

Antonyuk, S.V., Strange, R.W., Ellis, M.J., Bessho, Y., Kuramitsu, S., Yokoyama, S., Hasnain, S.S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 1209-1213

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Aquifex aeolicus
Macromolecule	D-lactate dehydrogenase (protein)
Unique Ligands	1PE, GOL, LAC, NAD, PEG, PPI

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3NKX \| pdb_00003nkx	Download File View File

Impaired binding of 14-3-3 to Raf1 is linked to Noonan and LEOPARD syndrome

Schumacher, B., Weyand, M., Ottmann, C.

(2010) Mol Cell Biol 30: 4698-4711

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein zeta/delta (protein) Peptide of RAF proto-oncogene serine/threonine-protein kinase (protein)
Unique Ligands	PPI

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3OYP \| pdb_00003oyp	Download File View File

HCV NS3/4A in complex with ligand 3

Hagel, M., Niu, D., St.Martin, T., Sheets, M.P., Qiao, L., Bernard, H., Karp, R.M., Zhu, Z., Labenski, M.T., Chaturvedi, P.C., Nacht, M., Westlin, W.F., Petter, R.C., Singh, J.

(2011) Nat Chem Biol 7: 22-24

Released	2010-12-01
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	Hepatitis C virus (isolate Japanese)
Macromolecule	Non-structural protein 4A (protein) Peptidomimetic inhibitor (protein) Serine protease NS3 (protein)
Unique Ligands	ZN

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4CVB \| pdb_00004cvb	Download File View File

Crystal structure of quinone-dependent alcohol dehydrogenase from Pseudogluconobacter saccharoketogenenes

Rozeboom, H.J., Yu, S., Mikkelsen, R., Nikolaev, I., Mulder, H., Dijkstra, B.W.

(2015) Protein Sci 24: 2044

Released	2015-03-25
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Pseudogluconobacter saccharoketogenes
Macromolecule	ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	CA, CL, PPI, PQQ, ZN

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4CVC \| pdb_00004cvc	Download File View File

Crystal structure of quinone-dependent alcohol dehydrogenase from Pseudogluconobacter saccharoketogenenes with zinc in the active site

Rozeboom, H.J., Yu, S., Mikkelsen, R., Nikolaev, I., Mulder, H., Dijkstra, B.W.

(2015) Protein Sci 24: 2044

Released	2015-03-25
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Pseudogluconobacter saccharoketogenes
Macromolecule	ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	CL, PEG, PPI, PQQ, ZN

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4H82 \| pdb_00004h82	Download File View File

Crystal structure of mutant MMP-9 catalytic domain in complex with a twin inhibitor.

Antoni, C., Stura, E.A., Vera, L., Cassar-Lajeunesse, E., Nuti, E., Dive, V., Rossello, A.

(2013) J Struct Biol 182: 246-254

Released	2013-05-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Matrix metalloproteinase-9 (protein)
Unique Ligands	CA, GOL, L29, PEG, PGO, PPI, ZN

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4JFZ \| pdb_00004jfz	Download File View File

Structure of phosphoserine (pSAb) scaffold bound to pSer peptide

Koerber, J.T., Thomsen, N.D., Hannigan, B.T., Degrado, W.F., Wells, J.A.

(2013) Nat Biotechnol 31: 916-921

Released	2013-08-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Fab heavy chain (protein) Fab light chain (protein) Phosphopeptide (protein)
Unique Ligands	PPI

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4JG0 \| pdb_00004jg0	Download File View File

Structure of phosphoserine/threonine (pSTAb) scaffold bound to pSer peptide

Koerber, J.T., Thomsen, N.D., Hannigan, B.T., Degrado, W.F., Wells, J.A.

(2013) Nat Biotechnol 31: 916-921

Released	2013-08-28
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Homo sapiens
Macromolecule	Fab heavy chain (protein) Fab light chain (protein) Phosphopeptide (protein)
Unique Ligands	PPI

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4JG1 \| pdb_00004jg1	Download File View File

Structure of phosphoserine/threonine (pSTAb) scaffold bound to pThr peptide

Koerber, J.T., Thomsen, N.D., Hannigan, B.T., Degrado, W.F., Wells, J.A.

(2013) Nat Biotechnol 31: 916-921

Released	2013-08-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Fab heavy chain (protein) Fab light chain (protein) Phosphopeptide (protein)
Unique Ligands	PPI

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4UWC \| pdb_00004uwc	Download File View File

Fibroblast growth factor receptor 1 kinase in complex with JK-P3

Beeston, H., Tucker, J., Kankanala, J.

(2021) Rapid Commun Mass Spectrom e9130-e9130

Released	2015-09-02
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	FIBROBLAST GROWTH FACTOR RECEPTOR 1 (protein)
Unique Ligands	4Y0, EDO, PPI, SO4

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4XH1 \| pdb_00004xh1	Download File View File

Crystal structure of Salmonella typhimurium propionate kinase in complex with AMPPNP and propionate

Murthy, A.M.V., Mathivanan, S., Chittori, S., Savithri, H.S., Murthy, M.R.N.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1640-1648

Released	2015-08-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Propionate kinase (protein)
Unique Ligands	ANP, GOL, PPI

1 to 25 of 62 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A8S | pdb_00001a8s

1ADL | pdb_00001adl

1LIC | pdb_00001lic

1LIE | pdb_00001lie

1SEG | pdb_00001seg

1TU9 | pdb_00001tu9

1UK6 | pdb_00001uk6

1UUX | pdb_00001uux

1UUY | pdb_00001uuy

2HUB | pdb_00002hub

2SFP | pdb_00002sfp

2UYP | pdb_00002uyp

3CU8 | pdb_00003cu8

3E5P | pdb_00003e5p

3KB6 | pdb_00003kb6

3NKX | pdb_00003nkx

3OYP | pdb_00003oyp

4CVB | pdb_00004cvb

4CVC | pdb_00004cvc

4H82 | pdb_00004h82

4JFZ | pdb_00004jfz

4JG0 | pdb_00004jg0

4JG1 | pdb_00004jg1

4UWC | pdb_00004uwc

4XH1 | pdb_00004xh1