RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Source Organism Taxonomy Name (Full Lineage) = "Staphylococcus phage GRCS"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 103 Structures.

Refinements

Structure Determination Methodology

experimental (103)

Scientific Name of Source Organism

	synthetic construct (33)
	Homo sapiens (32)
	Escherichia coli (18)
	Komagataella phaffii GS115 (15)
	Saccharomyces cerevisiae (14)
	Saccharomyces cerevisiae S288C (13)
	Komagataella phaffii CBS 7435 (7)
	Bacillus subtilis (6)
	Escherichia coli O157:H7 (4)
	Aquifex aeolicus (2)

More...

Taxonomy

	Eukaryota (63)
	Bacteria (34)
	other sequences (33)
	Riboviria (4)
	Duplodnaviria (3)
	Archaea (2)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (61)
	ELECTRON MICROSCOPY (33)
	SOLUTION NMR (9)

Polymer Entity Type

	Protein (103)
	RNA (97)
	DNA (48)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (10)
	2.0 - 2.5 (8)
	2.5 - 3.0 (9)
	3.0 - 3.5 (30)
	3.5 - 4.0 (11)
	4.0 - 4.5 (10)
	> 4.5 (14)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (10)
	2005 - 2009 (16)
	2010 - 2014 (24)
	2015 - 2019 (28)
	2020 - 2024 (21)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (50)
	Hydrolases (22)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (83)
	Cyclic (14)
	Dihedral (5)
	Helical (1)

SCOP Classification

	All alpha proteins (13)
	All beta proteins (14)
	Alpha and beta proteins (a+b) (19)
	Alpha and beta proteins (a/b) (10)
	Multi-domain proteins (alpha and beta) (5)
	Small proteins (5)
	Artifacts (3)
	Peptides (3)

AllSelected

1 to 25 of 103 Structures

Page 1 of 5

Sort by

Explore in 3D

1A4T \| pdb_00001a4t	Download File View File

SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES

Cai, Z., Gorin, A.A., Frederick, R., Ye, X., Hu, W., Majumdar, A., Kettani, A., Patel, D.J.

(1998) Nat Struct Biol 5: 203-212

Released	1998-04-29
Method	SOLUTION NMR
Organisms	Lederbergvirus P22
Macromolecule	20-MER BASIC PEPTIDE (protein) BOXB RNA (nucleic acid)

Explore in 3D

1FXL \| pdb_00001fxl	Download File View File

CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE C-FOS RNA

Wang, X., Hall, T.M.T.

(2001) Nat Struct Biol 8: 141-145

Released	2001-02-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD (protein) 5'-R(PUPUPUPUPAPUPUPUP*U)-3' (nucleic acid)

Explore in 3D

1G2E \| pdb_00001g2e	Download File View File

CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE TUMOR NECROSIS FACTOR ALPHA RNA

Wang, X., Hall, T.M.T.

(2001) Nat Struct Biol 8: 141-145

Released	2001-02-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PARANEOPLASTIC ENCEPHALOMYELITIS ANTIGEN HUD (protein) 5'-R(PUPAPUPUPUPAPUPUPUPA)-3' (nucleic acid)

Explore in 3D

1L1C \| pdb_00001l1c	Download File View File

Structure of the LicT Bacterial Antiterminator Protein in Complex with its RNA Target

Yang, Y., Declerck, N., Manival, X., Aymerich, S., Kochoyan, M.

(2002) EMBO J 21: 1987-1997

Released	2002-03-27
Method	SOLUTION NMR
Organisms	Bacillus subtilis
Macromolecule	Transcription antiterminator licT (protein) licT mRNA antiterminator hairpin (nucleic acid)

Explore in 3D

1NYB \| pdb_00001nyb	Download File View File

SOLUTION STRUCTURE OF THE BACTERIOPHAGE PHI21 N PEPTIDE-BOXB RNA COMPLEX

Cilley, C.D., Williamson, J.R.

(2003) RNA 9: 663-676

Released	2003-06-24
Method	SOLUTION NMR
Organisms	Enterobacteria phage phi21
Macromolecule	Probable regulatory protein N (protein) BoxB RNA (nucleic acid)

Explore in 3D

1OOA \| pdb_00001ooa	Download File View File

CRYSTAL STRUCTURE OF NF-kB(p50)2 COMPLEXED TO A HIGH-AFFINITY RNA APTAMER

Huang, D.B., Vu, D., Cassiday, L.A., Zimmerman, J.M., Maher III, L.J., Ghosh, G.

(2003) Proc Natl Acad Sci U S A 100: 9268-9273

Released	2003-07-22
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mus musculus
Macromolecule	Nuclear factor NF-kappa-B p105 subunit (protein) RNA aptamer (nucleic acid)

Explore in 3D

1PVO \| pdb_00001pvo	Download File View File

X-ray crystal structure of Rho transcription termination factor in complex with ssRNA substrate and ANPPNP

Skordalakes, E., Berger, J.M.

(2003) Cell 114: 135-146

Released	2003-07-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Transcription termination factor rho (protein) 5'-R(PUPC)-3' (nucleic acid)
Unique Ligands	ANP

Explore in 3D

1QFQ \| pdb_00001qfq	Download File View File

Bacteriophage Lambda N-protein-NutboxB-RNA Complex

Schaerpf, M., Sticht, H., Roesch, P.

(2000) Eur J Biochem 267: 2397-2408

Released	1999-04-20
Method	SOLUTION NMR
Organisms	Lambdavirus lambda
Macromolecule	36-mer N-terminal peptide of the N protein (protein) 15-mer nutRboxB RNA hairpin (nucleic acid)

Explore in 3D

1RKJ \| pdb_00001rkj	Download File View File

Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target

Johansson, C., Finger, L.D., Trantirek, L., Mueller, T.D., Kim, S., Laird-Offringa, I.A., Feigon, J.

(2004) J Mol Biology 337: 799-816

Released	2004-04-27
Method	SOLUTION NMR
Organisms	Mesocricetus auratus
Macromolecule	Nucleolin (protein) 5'-R(GPGPAPUPGPCPCPUPCPCPCPGPAPGPUPGPCPAPUPCP*C)-3' (nucleic acid)

Explore in 3D

1S03 \| pdb_00001s03	Download File View File

The Structure of a Ribosomal Protein S8/spc Operon mRNA Complex

Merianos, H.J., Wang, J., Moore, P.B.

(2004) RNA 10: 954-964

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	30S ribosomal protein S8 (protein) 47-MER (nucleic acid)
Unique Ligands	ZN

Explore in 3D

1U63 \| pdb_00001u63	Download File View File

THE STRUCTURE OF A RIBOSOMAL PROTEIN L1-mRNA COMPLEX

Nevskaya, N., Tishchenko, S., Gabdoulkhakov, A., Nikonova, E., Nikonov, O., Nikulin, A., Garber, M., Nikonov, S., Piendl, W.

(2005) Nucleic Acids Res 33: 478-485

Released	2005-04-12
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	50S ribosomal protein L1P (protein) 49 NT FRAGMENT OF MRNA FOR L1 (nucleic acid)

Explore in 3D

1URN \| pdb_00001urn	Download File View File

U1A MUTANT/RNA COMPLEX + GLYCEROL

Oubridge, C., Ito, N., Evans, P.R., Teo, C.-H., Nagai, K.

(1994) Nature 372: 432-438

Released	1996-03-08
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (U1A) (protein) RNA (5'-R(APAPUPCPCPAPUPUPGPCPAPCPUPCPCPGPG PAPUPUP*U)-3') (nucleic acid)
Unique Ligands	CL, GOL

Explore in 3D

1WMQ \| pdb_00001wmq	Download File View File

Structure of the HutP antitermination complex bound to a single stranded region of hut mRNA

Kumarevel, T.S., Mizuno, H., Kumar, P.K.R.

(2005) Nature 434: 183-191

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus subtilis
Macromolecule	Hut operon positive regulatory protein (protein) 5'-R(PUPUPUPAPGPUP*U)-3' (nucleic acid)
Unique Ligands	HIS, MG

Explore in 3D

1WPU \| pdb_00001wpu	Download File View File

Crystal Structure of the HutP antitermination complex bound to a single stranded region of hut mRNA

Kumarevel, T.S., Mizuno, H., Kumar, P.K.R.

To be published

Released	2005-08-30
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Bacillus subtilis
Macromolecule	Hut operon positive regulatory protein (protein) 5'-R(UPUPGPAPGPUP*U)-3' (nucleic acid)
Unique Ligands	HIS, MG

Explore in 3D

1WRQ \| pdb_00001wrq	Download File View File

Crystal Structure of HutP-Antitermination complex

Kumarevel, T., Mizuno, H., Kumar, P.K.R.

To be published

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Hut operon positive regulatory protein (protein) 5'-R(UPUPUPAPGPUP*U)-3' (nucleic acid)
Unique Ligands	HIS, MG

Explore in 3D

1XPO \| pdb_00001xpo	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic bicyclomycin

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2005-02-08
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, BCM, MG

Explore in 3D

1XPR \| pdb_00001xpr	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-formylbicyclomycin (FB)

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2004-11-02
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, FB, MG

Explore in 3D

1XPU \| pdb_00001xpu	Download File View File

Structural mechanism of inhibition of the Rho transcription termination factor by the antibiotic 5a-(3-formylphenylsulfanyl)-dihydrobicyclomycin (FPDB)

Skordalakes, E., Brogan, A.P., Park, B.S., Kohn, H., Berger, J.M.

(2005) Structure 13: 99-109

Released	2004-11-02
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli
Macromolecule	Rho transcription termination factor (protein) 5'-R(CPUPCPUPCPUPCPU)-3' (nucleic acid)
Unique Ligands	AGS, FPD, MG

Explore in 3D

1YTY \| pdb_00001yty	Download File View File

Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen

Teplova, M., Yuan, Y.R., Ilin, S., Malinina, L., Phan, A.T., Teplov, A., Patel, D.J.

(2006) Mol Cell 21: 75-85

Released	2006-01-17
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens
Macromolecule	Lupus La protein (protein) 5'-R(UPGPCPUPGPUPUPUP*U)-3' (nucleic acid)

Explore in 3D

1ZH5 \| pdb_00001zh5	Download File View File

Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen

Teplova, M., Yuan, Y.R., Ilin, S., Malinina, L., Phan, A.T., Teplov, A., Patel, D.J.

(2006) Mol Cell 21: 75-85

Released	2006-01-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Lupus La protein (protein) 5'-R(UPGPCPUPGPUPUPUP*U)-3' (nucleic acid)
Unique Ligands	SO4

Explore in 3D

2ASB \| pdb_00002asb	Download File View File

Structure of a Mycobacterium tuberculosis NusA-RNA complex

Beuth, B., Pennell, S., Arnvig, K.B., Martin, S.R., Taylor, I.A.

(2005) EMBO J 24: 3576-3587

Released	2005-10-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Transcription elongation protein nusA (protein) ribosomal RNA (5'- GAACUCAAUAG -3') (nucleic acid)

Explore in 3D

2ATW \| pdb_00002atw	Download File View File

Structure of a Mycobacterium tuberculosis NusA-RNA complex

Beuth, B., Pennell, S., Arnvig, K.B., Martin, S.R., Taylor, I.A.

(2005) EMBO J 24: 3576-3587

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Transcription elongation protein nusA (protein) ribosomal RNA (5'- AGAACUCAAUAG -3') (nucleic acid)

Explore in 3D

2HGH \| pdb_00002hgh	Download File View File

Transcription Factor IIIA zinc fingers 4-6 bound to 5S rRNA 55mer (NMR structure)

Lee, B.M.

(2006) J Mol Biology 357: 275-291

Released	2006-08-01
Method	SOLUTION NMR
Organisms	Xenopus laevis
Macromolecule	Transcription factor IIIA (protein) 55-MER (nucleic acid)
Unique Ligands	ZN

Explore in 3D

2LI8 \| pdb_00002li8	Download File View File

The solution structure of the Lin28-ZnF domains bound to AGGAGAU of pre-let-7 miRNA

Allain, F.H.-T., Loughlin, F.E.

(2011) Nat Struct Mol Biol 19: 84-89

Released	2011-12-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein lin-28 homolog A (protein) RNA (5'-R(APGPGPAPGPAP*U)-3') (nucleic acid)
Unique Ligands	ZN

Explore in 3D

2RQC \| pdb_00002rqc	Download File View File

Solution Structure of RNA-binding domain 3 of CUGBP1 in complex with RNA (UG)3

Tsuda, K., Kuwasako, K., Takahashi, M., Someya, T., Muto, Y., Inoue, M., Kigawa, T., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2009) Nucleic Acids Res 37: 5151-5166

Released	2009-08-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CUG-BP- and ETR-3-like factor 1 (protein) 5'-R(UPGPUPGPUPG)-3' (nucleic acid)

1 to 25 of 103 Structures

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1A4T | pdb_00001a4t

1FXL | pdb_00001fxl

1G2E | pdb_00001g2e

1L1C | pdb_00001l1c

1NYB | pdb_00001nyb

1OOA | pdb_00001ooa

1PVO | pdb_00001pvo

1QFQ | pdb_00001qfq

1RKJ | pdb_00001rkj

1S03 | pdb_00001s03

1U63 | pdb_00001u63

1URN | pdb_00001urn

1WMQ | pdb_00001wmq

1WPU | pdb_00001wpu

1WRQ | pdb_00001wrq

1XPO | pdb_00001xpo

1XPR | pdb_00001xpr

1XPU | pdb_00001xpu

1YTY | pdb_00001yty

1ZH5 | pdb_00001zh5

2ASB | pdb_00002asb

2ATW | pdb_00002atw

2HGH | pdb_00002hgh

2LI8 | pdb_00002li8

2RQC | pdb_00002rqc