7UJ3

Crystal structure of Human respiratory syncytial virus F variant (construct pXCS847A)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.237 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Rational design of a highly immunogenic prefusion-stabilized F glycoprotein antigen for a respiratory syncytial virus vaccine.

Che, Y.Gribenko, A.V.Song, X.Handke, L.D.Efferen, K.S.Tompkins, K.Kodali, S.Nunez, L.Prasad, A.K.Phelan, L.M.Ammirati, M.Yu, X.Lees, J.A.Chen, W.Martinez, L.Roopchand, V.Han, S.Qiu, X.DeVincenzo, J.P.Jansen, K.U.Dormitzer, P.R.Swanson, K.A.

(2023) Sci Transl Med 15: eade6422-eade6422

  • DOI: https://doi.org/10.1126/scitranslmed.ade6422
  • Primary Citation of Related Structures:  
    7UJ3, 7UJA

  • PubMed Abstract: 

    Respiratory syncytial virus (RSV) is the leading, global cause of serious respiratory disease in infants and is an important cause of respiratory illness in older adults. No RSV vaccine is currently available. The RSV fusion (F) glycoprotein is a key antigen for vaccine development, and its prefusion conformation is the target of the most potent neutralizing antibodies. Here, we describe a computational and experimental strategy for designing immunogens that enhance the conformational stability and immunogenicity of RSV prefusion F. We obtained an optimized vaccine antigen after screening nearly 400 engineered F constructs. Through in vitro and in vivo characterization studies, we identified F constructs that are more stable in the prefusion conformation and elicit ~10-fold higher serum-neutralizing titers in cotton rats than DS-Cav1. The stabilizing mutations of the lead construct (847) were introduced onto F glycoprotein backbones of strains representing the dominant circulating genotypes of the two major RSV subgroups, A and B. Immunization of cotton rats with a bivalent vaccine formulation of these antigens conferred complete protection against RSV challenge, with no evidence of disease enhancement. The resulting bivalent RSV prefusion F investigational vaccine has recently been shown to be efficacious against RSV disease in two pivotal phase 3 efficacy trials, one for passive protection of infants by immunization of pregnant women and the second for active protection of older adults by direct immunization.


  • Organizational Affiliation

    Discovery Sciences, Pfizer Inc, Groton, CT 06340, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RSV variant (construct pXCS847A) F2109Respiratory syncytial virusMutation(s): 1 
UniProt
Find proteins for A0A7D5GVC1 (Respiratory syncytial virus)
Explore A0A7D5GVC1 
Go to UniProtKB:  A0A7D5GVC1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7D5GVC1
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
RSV variant (construct pXCS847A) F1410Respiratory syncytial virusMutation(s): 3 
UniProt
Find proteins for A0A7D5GVC1 (Respiratory syncytial virus)
Explore A0A7D5GVC1 
Go to UniProtKB:  A0A7D5GVC1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7D5GVC1
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.237 
  • Space Group: P 41 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 170.02α = 90
b = 170.02β = 90
c = 170.02γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
HKL-2000data scaling
BUSTERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-19
    Type: Initial release
  • Version 1.1: 2023-05-10
    Changes: Database references
  • Version 1.2: 2023-10-25
    Changes: Data collection, Refinement description
  • Version 1.3: 2024-11-06
    Changes: Structure summary