7UJA

Cryo-EM structure of Human respiratory syncytial virus F variant (construct pXCS847A)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Rational design of a highly immunogenic prefusion-stabilized F glycoprotein antigen for a respiratory syncytial virus vaccine.

Che, Y.Gribenko, A.V.Song, X.Handke, L.D.Efferen, K.S.Tompkins, K.Kodali, S.Nunez, L.Prasad, A.K.Phelan, L.M.Ammirati, M.Yu, X.Lees, J.A.Chen, W.Martinez, L.Roopchand, V.Han, S.Qiu, X.DeVincenzo, J.P.Jansen, K.U.Dormitzer, P.R.Swanson, K.A.

(2023) Sci Transl Med 15: eade6422-eade6422

  • DOI: https://doi.org/10.1126/scitranslmed.ade6422
  • Primary Citation of Related Structures:  
    7UJ3, 7UJA

  • PubMed Abstract: 

    Respiratory syncytial virus (RSV) is the leading, global cause of serious respiratory disease in infants and is an important cause of respiratory illness in older adults. No RSV vaccine is currently available. The RSV fusion (F) glycoprotein is a key antigen for vaccine development, and its prefusion conformation is the target of the most potent neutralizing antibodies. Here, we describe a computational and experimental strategy for designing immunogens that enhance the conformational stability and immunogenicity of RSV prefusion F. We obtained an optimized vaccine antigen after screening nearly 400 engineered F constructs. Through in vitro and in vivo characterization studies, we identified F constructs that are more stable in the prefusion conformation and elicit ~10-fold higher serum-neutralizing titers in cotton rats than DS-Cav1. The stabilizing mutations of the lead construct (847) were introduced onto F glycoprotein backbones of strains representing the dominant circulating genotypes of the two major RSV subgroups, A and B. Immunization of cotton rats with a bivalent vaccine formulation of these antigens conferred complete protection against RSV challenge, with no evidence of disease enhancement. The resulting bivalent RSV prefusion F investigational vaccine has recently been shown to be efficacious against RSV disease in two pivotal phase 3 efficacy trials, one for passive protection of infants by immunization of pregnant women and the second for active protection of older adults by direct immunization.


  • Organizational Affiliation

    Discovery Sciences, Pfizer Inc, Groton, CT 06340, USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
RSV variant (construct pXCS847A) F1A,
C,
J [auth K]
410Respiratory syncytial virusMutation(s): 3 
UniProt
Find proteins for A0A218N9U8 (Human respiratory syncytial virus A)
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Go to UniProtKB:  A0A218N9U8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A218N9U8
Glycosylation
Glycosylation Sites: 1
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
AM14 Fab heavy chainB,
G,
K [auth L]
245Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
AM14 Fab light chainD,
N [auth H],
O [auth M]
218Mus musculusMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
AM22 Fab heavy chainE,
H [auth I],
L [auth N]
246Mus musculusMutation(s): 0 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
AM22 Fab light chainF,
I [auth J],
M [auth O]
215Mus musculusMutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
RSV variant (construct pXCS847A) F2
P, Q, R
109Respiratory syncytial virusMutation(s): 1 
UniProt
Find proteins for E0WLS1 (Human respiratory syncytial virus A)
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Go to UniProtKB:  E0WLS1
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UniProt GroupE0WLS1
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-19
    Type: Initial release
  • Version 1.1: 2023-05-10
    Changes: Database references
  • Version 1.2: 2024-10-23
    Changes: Data collection, Structure summary