1QBK
STRUCTURE OF THE KARYOPHERIN BETA2-RAN GPPNHP NUCLEAR TRANSPORT COMPLEX
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d1qbkb_ | All alpha proteins | alpha-alpha superhelix | ARM repeat | Armadillo repeat | Karyopherin beta2 | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth C] | d1qbkc_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | Ran | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2 Family | Armadillo repeat | 8026172 | 4001272 | SCOP2 (2022-06-29) |
A [auth B] | SCOP2 Superfamily | ARM repeat-like | 8038551 | 3000116 | SCOP2 (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057412 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | IBN_N | e1qbkB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: IBN_N | ECOD (1.6) |
B [auth C] | Ras | e1qbkC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 1.25.10.10 | Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant | CATH (4.3.0) |
B [auth C] | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF03810 | Importin-beta N-terminal domain (IBN_N) | Importin-beta N-terminal domain | - | Repeat |
A [auth B] | PF02985 | HEAT repeat (HEAT) | HEAT repeat | - | Repeat |
A [auth B] | PF13513 | HEAT-like repeat (HEAT_EZ) | HEAT-like repeat | - | Repeat |
B [auth C] | PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR040122 | Importin beta family | Family |
A [auth B] | IPR016024 | Armadillo-type fold | Homologous Superfamily |
A [auth B] | IPR001494 | Importin-beta, N-terminal domain | Domain |
A [auth B] | IPR011989 | Armadillo-like helical | Homologous Superfamily |
A [auth B] | IPR000357 | HEAT repeat | Repeat |
B [auth C] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
B [auth C] | IPR002041 | Ran GTPase | Family |
B [auth C] | IPR005225 | Small GTP-binding domain | Domain |
B [auth C] | IPR001806 | Small GTPase | Family |