Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRibonuclease H-like 8053637 3000143 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPAZ domain 8053635 3001750 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRNA-binding domain, RBD 8053634 3000110 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMid domain of argonaute 8053636 3002210 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPAZ domain 8053635 3001750 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMid domain of argonaute 8053636 3002210 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibonuclease H-like 8053637 3000143 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRNA-binding domain, RBD 8053634 3000110 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF07576e3f73A3 A: beta barrelsX: SH3H: SH3T: SH3F: EUF07576ECOD (1.6)
AEUF08364e3f73A1 A: a+b two layersX: Alpha-beta plaitsH: Argonaute, N-terminal domain (From Topology)T: Argonaute, N-terminal domainF: EUF08364ECOD (1.6)
AEUF08368e3f73A2 A: a+b two layersX: Alpha-beta plaitsH: Argonaute, N-terminal domain (From Topology)T: Argonaute, N-terminal domainF: EUF08368ECOD (1.6)
APiwi_piwi-like_ProArke3f73A4 A: a/b three-layered sandwichesX: Middle domain in Argonaute homologs (From Topology)H: Middle domain in Argonaute homologs (From Topology)T: Middle domain in Argonaute homologsF: Piwi_piwi-like_ProArkECOD (1.6)
APiwi_C_1e3f73A5 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Piwi_C_1ECOD (1.6)
BEUF07576e3f73B4 A: beta barrelsX: SH3H: SH3T: SH3F: EUF07576ECOD (1.6)
BEUF08364e3f73B3 A: a+b two layersX: Alpha-beta plaitsH: Argonaute, N-terminal domain (From Topology)T: Argonaute, N-terminal domainF: EUF08364ECOD (1.6)
BEUF08368e3f73B5 A: a+b two layersX: Alpha-beta plaitsH: Argonaute, N-terminal domain (From Topology)T: Argonaute, N-terminal domainF: EUF08368ECOD (1.6)
BPiwi_piwi-like_ProArke3f73B6 A: a/b three-layered sandwichesX: Middle domain in Argonaute homologs (From Topology)H: Middle domain in Argonaute homologs (From Topology)T: Middle domain in Argonaute homologsF: Piwi_piwi-like_ProArkECOD (1.6)
BPiwi_C_1e3f73B1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Piwi_C_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF22472Argonaute, N-terminal domain (Ago_N_2)Argonaute, N-terminal domainThis domain is found at the N-terminal end of Protein argonaute from Thermus thermophilus (Ago), a site-specific DNA-guided endoRNase organised into four domain: N (this entry), PAZ (Pfam:PF18309), Mid and PIWI (Pfam:PF02171). This domain shows a mix ...This domain is found at the N-terminal end of Protein argonaute from Thermus thermophilus (Ago), a site-specific DNA-guided endoRNase organised into four domain: N (this entry), PAZ (Pfam:PF18309), Mid and PIWI (Pfam:PF02171). This domain shows a mixed alpha-beta structure [1].
Domain
A, B
PF22474Argonaute, middle domain (Ago_Mid)Argonaute, middle domainThis domain is found at the N-terminal end of Protein argonaute from Thermus thermophilus (Ago), a site-specific DNA-guided endoRNase organised into four domain: N (Pfam:PF22472), PAZ (Pfam:PF18309), Mid (this entry) and PIWI (Pfam:PF02171). This dom ...This domain is found at the N-terminal end of Protein argonaute from Thermus thermophilus (Ago), a site-specific DNA-guided endoRNase organised into four domain: N (Pfam:PF22472), PAZ (Pfam:PF18309), Mid (this entry) and PIWI (Pfam:PF02171). This domain contains residues that have been reported to be critical for cleavage activity. It folds into an alpha-beta three layered sandwich [1].
Domain
A, B
PF18309Argonaute PAZ domain (PAZ_3)Argonaute PAZ domainThis is a PAZ domain is found in argonaute present in Thermus thermophiles. Argonaute has a central role in the RNA interference pathway by mediating the maturation of small interfering RNA (siRNA) through initial degradation of the passenger strand ...This is a PAZ domain is found in argonaute present in Thermus thermophiles. Argonaute has a central role in the RNA interference pathway by mediating the maturation of small interfering RNA (siRNA) through initial degradation of the passenger strand, followed by guide-strand-mediated sequence-specific cleavage of target mRNA. The nucleic-acid-binding channel is thought to be positioned between the PAZ and PIWI domain [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
ARGONAUTE -
C,
E [auth X]
DNA (5'-D(P*DTP*DGP*DAP*DGP*DGP*DTP*DAP*DGP*DTP*DAP*DGP*DGP*DTP*DTP*DGP*DTP*DA*DTP*DAP*DGP*DT)-3')---
D [auth H],
F [auth Y]
RNA (5'-R(*UP*AP*UP*AP*CP*AP*A*CP*UP*CP*AP*CP*UP*AP*CP*CP*UP*CP*GP*U)-3')---

InterPro: Protein Family Classification InterPro Database Homepage