5SV0 | pdb_00005sv0

Structure of the ExbB/ExbD complex from E. coli at pH 7.0

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	MotA_ExbB	e5sv0B1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
C [auth D]	MotA_ExbB	e5sv0D1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
D [auth E]	MotA_ExbB	e5sv0E1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
E [auth F]	MotA_ExbB	e5sv0F1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
F [auth G]	MotA_ExbB	e5sv0G1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
G [auth H]	MotA_ExbB	e5sv0H1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
I [auth J]	MotA_ExbB	e5sv0J1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
J [auth A]	MotA_ExbB	e5sv0A1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
B [auth C]	MotA_ExbB	e5sv0C1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)
H [auth I]	MotA_ExbB	e5sv0I1	A: alpha bundles	X: Bacterial hemolysins-like	H: Biopolymer transport protein ExbB (From Topology)	T: Biopolymer transport protein ExbB	F: MotA_ExbB	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	PF01618	MotA/TolQ/ExbB proton channel family (MotA_ExbB)	MotA/TolQ/ExbB proton channel family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	Biopolymer transport protein ExbB	molecular transducer activity energy transducer activity transporter activity transmembrane transporter activity identical protein binding protein binding binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis protein localization protein import establishment of protein localization cellular localization intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis protein localization protein import establishment of protein localization cellular localization nitrogen compound transport transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization cellular process regulation of protein stability biological regulation regulation of biological quality protein stabilization amide transport bacteriocin transport vitamin transport cobalamin transport import into cell siderophore-dependent iron import into cell iron import into cell ferric-hydroxamate import into cell metal ion transport ferrichrome import into cell establishment of localization in cell monoatomic ion transport monoatomic cation transport iron ion transport transition metal ion transport iron coordination entity transport	cellular anatomical structure membrane cell periphery protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex transmembrane transporter complex transporter complex cell outer membrane external encapsulating structure cell envelope outer membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	IPR014164	TonB-system energizer ExbB type-1	Family
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	IPR002898	MotA/TolQ/ExbB proton channel	Domain
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	IPR050790	ExbB/TolQ Biopolymer Transport	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F] A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	OPM				MotA/TolQ/ExbB channel

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F] A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F] A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F] A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Channels: Other Ion Channels	ExbB/ExbD complex associated with TonB complex, pH 7.0

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth A]	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.