7NXQ

Structure of the pentameric C-terminal domain of the capsid protein from Kaposi's sarcoma-associated herpesvirus (KSHV)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	PF01499	e7nxqH1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
A	PF01499	e7nxqA1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
B	PF01499	e7nxqB1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
C	PF01499	e7nxqC1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
D	PF01499	e7nxqD1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
E	PF01499	e7nxqE1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
F	PF01499	e7nxqF1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
G	PF01499	e7nxqG1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
I	PF01499	e7nxqI1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)
J	PF01499	e7nxqJ1	A: alpha arrays	X: Virion protein UL25 (From Topology)	H: Virion protein UL25 (From Topology)	T: Virion protein UL25	F: PF01499	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF01499	Herpesvirus UL25 family (Herpes_UL25)	Herpesvirus UL25 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Capsid vertex component 2	-	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell viral release from host cell viral penetration into host nucleus intracellular transport of virus transport of virus virion assembly viral genome packaging	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR002493	Herpesvirus UL25	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.