8Y0Q

Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth 2]	PF00073	picornavirus capsid protein (Rhv)	picornavirus capsid protein	CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...	CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.	Domain
A [auth 1]	PF22663	Picornavirus coat protein (Rhv_5)	Picornavirus coat protein	This domain is found in capsid proteins from picornavirus, such as enterovirus, rhinovirus and foot-and-mouth disease virus [1-5].	Domain
C [auth 3]	PF00073	picornavirus capsid protein (Rhv)	picornavirus capsid protein	CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...	CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth 2]	VP2 of capsid protein	5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups pyrophosphatase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups pyrophosphatase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity endopeptidase activity structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell symbiont entry into host cellular process endocytosis involved in viral entry into host cell endocytosis transport of virus viral gene expression viral protein processing	viral capsid icosahedral viral capsid virion component intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region
A [auth 1]	VP1 of capsid protein	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	viral capsid virion component
C [auth 3]	VP3 of capsid protein	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	viral capsid icosahedral viral capsid virion component intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region
D [auth 4]	VP4 of capsid protein	5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups pyrophosphatase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups pyrophosphatase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein cysteine-type endopeptidase activity endopeptidase activity structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell symbiont entry into host cellular process endocytosis involved in viral entry into host cell endocytosis transport of virus viral gene expression viral protein processing	viral capsid icosahedral viral capsid virion component intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region
E [auth H]	pOA2 VH	-	-	-
F [auth L]	pOA2 VL	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth 2]	IPR029053	Viral coat protein subunit	Homologous Superfamily
B [auth 2]	IPR004080	Foot-and-mouth disease virus VP1 coat	Domain
B [auth 2]	IPR015031	Capsid protein VP4, Picornavirus	Domain
B [auth 2]	IPR033703	Picornavirus/Calicivirus coat protein	Domain
B [auth 2]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
B [auth 2]	IPR008739	Peptidase C28, foot-and-mouth virus L-proteinase	Domain
B [auth 2]	IPR001676	Picornavirus capsid	Domain
B [auth 2]	IPR037080	Capsid protein VP4 superfamily, Picornavirus	Homologous Superfamily
A [auth 1]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A [auth 1]	IPR004080	Foot-and-mouth disease virus VP1 coat	Domain
A [auth 1]	IPR033703	Picornavirus/Calicivirus coat protein	Domain
C [auth 3]	IPR029053	Viral coat protein subunit	Homologous Superfamily
C [auth 3]	IPR004080	Foot-and-mouth disease virus VP1 coat	Domain
C [auth 3]	IPR015031	Capsid protein VP4, Picornavirus	Domain
C [auth 3]	IPR001676	Picornavirus capsid	Domain
C [auth 3]	IPR033703	Picornavirus/Calicivirus coat protein	Domain
C [auth 3]	IPR037080	Capsid protein VP4 superfamily, Picornavirus	Homologous Superfamily
D [auth 4]	IPR029053	Viral coat protein subunit	Homologous Superfamily
D [auth 4]	IPR004080	Foot-and-mouth disease virus VP1 coat	Domain
D [auth 4]	IPR015031	Capsid protein VP4, Picornavirus	Domain
D [auth 4]	IPR033703	Picornavirus/Calicivirus coat protein	Domain
D [auth 4]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
D [auth 4]	IPR008739	Peptidase C28, foot-and-mouth virus L-proteinase	Domain
D [auth 4]	IPR001676	Picornavirus capsid	Domain
D [auth 4]	IPR037080	Capsid protein VP4 superfamily, Picornavirus	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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8Y0Q

Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage