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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Blanco, A.G."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Escherichia coli (8)
	Human herpesvirus 5 strain Towne (2)
	Streptococcus agalactiae (2)
	Escherichia coli K-12 (1)

Taxonomy

	Bacteria (10)
	Duplodnaviria (2)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

	Protein (12)
	DNA (5)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (8)
	2010 - 2014 (3)

Enzyme Classification Name

	Hydrolases (2)
	Transferases (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (1)

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1 to 13 of 13 Structures

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1GXP \| pdb_00001gxp	Download File View File

PhoB effector domain in complex with pho box DNA.

Blanco, A.G., Sola, M., Gomis-Ruth, F.X., Coll, M.

(2002) Structure 10: 701

Released	2002-04-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN (protein) 5'-D(CPCPCPGPTPGPAPCPAPAP* CPTPTPTPAPTPGPAPCPAPGPCPT)-3' (nucleic acid) 5'-D(GPAPGPCPTPGPTPCPAPTP* APAPAPGPTPTPGPTPCPAPCPGPG)-3' (nucleic acid)

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1GXQ \| pdb_00001gxq	Download File View File

Crystal structure of the PhoB effector domain

Blanco, A.G., Sola, M., Gomis-Ruth, F.X., Coll, M.

(2002) Structure 10: 701

Released	2002-04-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB (protein)

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1ZM5 \| pdb_00001zm5	Download File View File

Conjugative Relaxase TRWC in complex with ORIT dna, cooper-bound structure

Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Coll, M., de la Cruz, F.

(2006) J Mol Biology 358: 857-869

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	TrwC (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	CU, SO4

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2CDM \| pdb_00002cdm	Download File View File

The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site

Boer, R., Russi, S., Guasch, A., Lucas, M., Blanco, A.G., Perez-Luque, R., Coll, M., de la Cruz, F.

(2006) J Mol Biology 358: 857

Released	2006-07-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	TRWC (protein) 5'-D(GPCPGPCPAPCPCPGPAPAP APGPGPTPGPCPGPTPAPTPTPGPTPCPTPAP*T)-3' (nucleic acid)
Unique Ligands	SO4

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2ET0 \| pdb_00002et0	Download File View File

The structure of a three-way DNA junction in complex with a metallo-supramolecular helicate reveals a new target for drugs

Oleksi, A., Blanco, A.G., Boer, R., Uson, I., Aymami, J., Coll, M.

(2006) Angew Chem Int Ed Engl 45: 1227-1231

Released	2006-03-14
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	FE2, NPM

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2IYN \| pdb_00002iyn	Download File View File

The co-factor-induced pre-active conformation in PhoB

Sola, M., Drew, D.L., Blanco, A.G., Gomis-Ruth, F.X., Coll, M.

(2006) Acta Crystallogr D Biol Crystallogr 62: 1046

Released	2006-08-30
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Escherichia coli
Macromolecule	PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB (protein)
Unique Ligands	MG

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2JB9 \| pdb_00002jb9	Download File View File

PhoB response regulator receiver domain constitutively-active double mutant D10A and D53E.

Ferrer-Orta, C., Arribas-Bosacoma, R., Kim, S.-K., Blanco, A.G., Pereira, P.J.B., Gomis-Ruth, F.X., Wanner, B.L., Coll, M., Sola, M.

(2007) J Mol Biology 366: 626

Released	2007-01-04
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB (protein)

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2JBA \| pdb_00002jba	Download File View File

PhoB response regulator receiver domain constitutively-active double mutant D53A and Y102C.

Arribas-Bosacoma, R., Ferrer-Orta, C., Kim, S.-K., Blanco, A.G., Pereira, P.J.B., Gomis-Ruth, F.X., Wanner, B.L., Coll, M., Sola, M.

(2007) J Mol Biology 366: 626

Released	2007-01-04
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Escherichia coli
Macromolecule	PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB (protein)
Unique Ligands	NA, TRS

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3DKX \| pdb_00003dkx	Download File View File

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution

Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.

(2009) EMBO J 28: 1666-1678

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein repB (protein)
Unique Ligands	CL, MG, MN

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3DKY \| pdb_00003dky	Download File View File

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution

Boer, D.R., Ruiz-Maso, J.A., Blanco, A.G., Vives-Llacer, M., Uson, I., Gomis-Ruth, F.X., Espinosa, M., Del Solar, G., Coll, M.

(2009) EMBO J 28: 1666-1678

Released	2009-06-30
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Streptococcus agalactiae
Macromolecule	Replication protein repB (protein)
Unique Ligands	MN

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3N4P \| pdb_00003n4p	Download File View File

Human cytomegalovirus terminase nuclease domain

Nadal, M., Mas, P.J., Blanco, A.G., Arnan, C., Sola, M., Hart, D.J., Coll, M.

(2010) Proc Natl Acad Sci U S A 107: 16078-16083

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Human herpesvirus 5 strain Towne
Macromolecule	Terminase subunit UL89 protein (protein)
Unique Ligands	MG

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3N4Q \| pdb_00003n4q	Download File View File

Human cytomegalovirus terminase nuclease domain, Mn soaked

Nadal, M., Mas, P.J., Blanco, A.G., Arnan, C., Sola, M., Hart, D.J., Coll, M.

(2010) Proc Natl Acad Sci U S A 107: 16078-16083

Released	2010-10-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Human herpesvirus 5 strain Towne
Macromolecule	TERMINASE SUBUNIT UL89 PROTEIN (protein)
Unique Ligands	MG, MN

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3T72 \| pdb_00003t72	Download File View File

PhoB(E)-Sigma70(4)-(RNAP-Betha-flap-tip-helix)-DNA Transcription Activation Sub-Complex

Blanco, A.G., Canals, A., Bernues, J., Sola, M., Coll, M.

(2011) EMBO J 30: 3776-3785

Released	2011-09-21
Method	X-RAY DIFFRACTION 4.33 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Phosphate regulon transcriptional regulatory protein phoB (protein) RNA polymerase sigma factor rpoD, DNA-directed RNA polymerase subunit beta (protein) PHO BOX DNA (STRAND 1) (nucleic acid) PHO BOX DNA (STRAND 2) (nucleic acid)

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1GXP | pdb_00001gxp

PhoB effector domain in complex with pho box DNA.

1GXQ | pdb_00001gxq

Crystal structure of the PhoB effector domain

1ZM5 | pdb_00001zm5

Conjugative Relaxase TRWC in complex with ORIT dna, cooper-bound structure

2CDM | pdb_00002cdm

The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site

2ET0 | pdb_00002et0

The structure of a three-way DNA junction in complex with a metallo-supramolecular helicate reveals a new target for drugs

2IYN | pdb_00002iyn

The co-factor-induced pre-active conformation in PhoB

2JB9 | pdb_00002jb9

PhoB response regulator receiver domain constitutively-active double mutant D10A and D53E.

2JBA | pdb_00002jba

PhoB response regulator receiver domain constitutively-active double mutant D53A and Y102C.

3DKX | pdb_00003dkx

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution

3DKY | pdb_00003dky

Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), tetragonal form, to 3.6 Ang resolution

3N4P | pdb_00003n4p

Human cytomegalovirus terminase nuclease domain

3N4Q | pdb_00003n4q

Human cytomegalovirus terminase nuclease domain, Mn soaked

3T72 | pdb_00003t72

PhoB(E)-Sigma70(4)-(RNAP-Betha-flap-tip-helix)-DNA Transcription Activation Sub-Complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1GXP | pdb_00001gxp

1GXQ | pdb_00001gxq

1ZM5 | pdb_00001zm5

2CDM | pdb_00002cdm

2ET0 | pdb_00002et0

2IYN | pdb_00002iyn

2JB9 | pdb_00002jb9

2JBA | pdb_00002jba

3DKX | pdb_00003dkx

3DKY | pdb_00003dky

3N4P | pdb_00003n4p

3N4Q | pdb_00003n4q

3T72 | pdb_00003t72