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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Diffley, J.F.X."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	synthetic construct (8)
	Homo sapiens (7)
	Saccharomyces cerevisiae (6)
	Saccharomyces cerevisiae S288C (2)

Taxonomy

	Eukaryota (14)
	other sequences (8)

Experimental Method

	ELECTRON MICROSCOPY (10)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

	Protein (14)
	DNA (10)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)
	3.0 - 3.5 (3)
	3.5 - 4.0 (3)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (7)
	2025 - 2029 (2)

Enzyme Classification Name

Hydrolases (9)

Symmetry Type

	Asymmetric (11)
	Cyclic (3)

AllSelected

1 to 14 of 14 Structures

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5ME9 \| pdb_00005me9	Download File View File

Crystal structure of yeast Cdt1 (N terminal and middle domain), form 1.

Pye, V.E., Frigola, J., Diffley, J.F.X., Cherepanov, P.

(2017) Nat Commun 8: 15720-15720

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division cycle protein CDT1 (protein)
Unique Ligands	GOL, SO4

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5MEA \| pdb_00005mea	Download File View File

Crystal structure of yeast Cdt1 (N terminal and middle domain), form 2.

Pye, V.E., Frigola, J., Diffley, J.F.X., Cherepanov, P.

(2017) Nat Commun 8: 15720-15720

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.152 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division cycle protein CDT1 (protein)
Unique Ligands	GOL, SO4

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5MEB \| pdb_00005meb	Download File View File

Crystal structure of yeast Cdt1 C-terminal domain

Pye, V.E., Frigola, J., Diffley, J.F.X., Cherepanov, P.

(2017) Nat Commun 8: 15720-15720

Released	2017-05-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division cycle protein CDT1 (protein)
Unique Ligands	SO4

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5MEC \| pdb_00005mec	Download File View File

Crystal structure of yeast Cdt1 middle domain (residues 294-433)

Pye, V.E., Frigola, J., Diffley, J.F.X., Cherepanov, P.

(2017) Nat Commun 8: 15720-15720

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Cell division cycle protein CDT1 (protein)

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6F0L \| pdb_00006f0l	Download File View File

S. cerevisiae MCM double hexamer bound to duplex DNA

Abid Ali, F., Pye, V.E., Douglas, M.E., Locke, J., Nans, A., Diffley, J.F.X., Costa, A.

(2017) Nat Commun 8: 2241-2241

Released	2017-12-06
Method	ELECTRON MICROSCOPY 4.77 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP

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8RIF \| pdb_00008rif	Download File View File

Cryo-EM structure of the MCM double hexamer loaded onto dsDNA.

Miller, T.C.R., Lim, C.T., Diffley, J.F.X., Costa, A.

To be published

Released	2025-01-01
Method	ELECTRON MICROSCOPY 2.79 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8RIG \| pdb_00008rig	Download File View File

Cryo-EM structure of an MCM helicase single hexamer loaded onto dsDNA.

Miller, T.C.R., Lim, C.T., Diffley, J.F.X., Costa, A.

To be published

Released	2025-01-01
Method	ELECTRON MICROSCOPY 3.41 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8S09 \| pdb_00008s09	Download File View File

H. sapiens MCM2-7 double hexamer bound to double stranded DNA

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8S0A \| pdb_00008s0a	Download File View File

H. sapiens MCM2-7 hexamer bound to double stranded DNA

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, ATP, MG, ZN

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8S0B \| pdb_00008s0b	Download File View File

H. sapiens MCM bound to double stranded DNA and ORC6 as part of the MCM-ORC complex

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2
Unique Ligands	ADP, AGS, MG, ZN

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8S0C \| pdb_00008s0c	Download File View File

H. sapiens ORC1-5 bound to double stranded DNA as part of the MCM-ORC complex

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	AGS, MG

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8S0D \| pdb_00008s0d	Download File View File

H. sapiens MCM bound to double stranded DNA and ORC1-6

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 2
Unique Ligands	ADP, AGS, MG, ZN

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8S0E \| pdb_00008s0e	Download File View File

H. sapiens OCCM bound to double stranded DNA

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 13 Unique nucleic acid chains: 2
Unique Ligands	AGS, MG, ZN

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8S0F \| pdb_00008s0f	Download File View File

H. sapiens OC1M bound to double stranded DNA

Greiwe, J.F., Weissmann, F., Diffley, J.F.X., Costa, A.

(2024) Nature 636: 499-508

Released	2024-10-02
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 12 Unique nucleic acid chains: 2
Unique Ligands	AGS, MG, ZN

1 to 14 of 14 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5ME9 | pdb_00005me9

Crystal structure of yeast Cdt1 (N terminal and middle domain), form 1.

5MEA | pdb_00005mea

Crystal structure of yeast Cdt1 (N terminal and middle domain), form 2.

5MEB | pdb_00005meb

Crystal structure of yeast Cdt1 C-terminal domain

5MEC | pdb_00005mec

Crystal structure of yeast Cdt1 middle domain (residues 294-433)

6F0L | pdb_00006f0l

S. cerevisiae MCM double hexamer bound to duplex DNA

8RIF | pdb_00008rif

Cryo-EM structure of the MCM double hexamer loaded onto dsDNA.

8RIG | pdb_00008rig

Cryo-EM structure of an MCM helicase single hexamer loaded onto dsDNA.

8S09 | pdb_00008s09

H. sapiens MCM2-7 double hexamer bound to double stranded DNA

8S0A | pdb_00008s0a

H. sapiens MCM2-7 hexamer bound to double stranded DNA

8S0B | pdb_00008s0b

H. sapiens MCM bound to double stranded DNA and ORC6 as part of the MCM-ORC complex

8S0C | pdb_00008s0c

H. sapiens ORC1-5 bound to double stranded DNA as part of the MCM-ORC complex

8S0D | pdb_00008s0d

H. sapiens MCM bound to double stranded DNA and ORC1-6

8S0E | pdb_00008s0e

H. sapiens OCCM bound to double stranded DNA

8S0F | pdb_00008s0f

H. sapiens OC1M bound to double stranded DNA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5ME9 | pdb_00005me9

5MEA | pdb_00005mea

5MEB | pdb_00005meb

5MEC | pdb_00005mec

6F0L | pdb_00006f0l

8RIF | pdb_00008rif

8RIG | pdb_00008rig

8S09 | pdb_00008s09

8S0A | pdb_00008s0a

8S0B | pdb_00008s0b

8S0C | pdb_00008s0c

8S0D | pdb_00008s0d

8S0E | pdb_00008s0e

8S0F | pdb_00008s0f