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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kurosaki, H."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Serratia marcescens (4)
	Escherichia coli (2)
	Acinetobacter baumannii (1)
	Chryseobacterium indologenes (1)
	Pseudomonas putida (1)

Taxonomy

Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (2)
	2020 - 2024 (3)

Enzyme Classification Name

Hydrolases (9)

Symmetry Type

	Asymmetric (7)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Multi-domain proteins (alpha and beta) (1)

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1 to 9 of 9 Structures

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1VGN \| pdb_00001vgn	Download File View File

Structure-based design of the irreversible inhibitors to metallo--lactamase (IMP-1)

Kurosaki, H., Yamaguchi, Y., Higashi, T., Soga, K., Matsueda, S., Misumi, S., Yamagata, Y., Arakawa, Y., Goto, M.

(2005) Angew Chem Int Ed Engl 44: 3861-3864

Released	2005-06-21
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Serratia marcescens
Macromolecule	Beta-lactamase IMP-1 (protein)
Unique Ligands	ACY, OPS, ZN

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2DOO \| pdb_00002doo	Download File View File

The structure of IMP-1 complexed with the detecting reagent (DansylC4SH) by a fluorescent probe

Kurosaki, H., Yamaguchi, Y., Yasuzawa, H., Jin, W., Yamagata, Y., Arakawa, Y.

(2006) ChemMedChem 1: 969-972

Released	2006-11-28
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Serratia marcescens
Macromolecule	BETA-LACTAMASE IMP-1 (protein)
Unique Ligands	C4H, ZN

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2YZ3 \| pdb_00002yz3	Download File View File

Crystallographic Investigation of Inhibition Mode of the VIM-2 Metallo-beta-lactamase from Pseudomonas aeruginosa with Mercaptocarboxylate Inhibitor

Yamaguchi, Y., Yamagata, Y., Arakawa, Y., Kurosaki, H.

(2007) J Med Chem 50: 6647-6653

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas putida
Macromolecule	Metallo-beta-lactamase (protein)
Unique Ligands	M5P, SO4, ZN

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2ZJ9 \| pdb_00002zj9	Download File View File

X-ray crystal structure of AmpC beta-Lactamase (AmpC(D)) from an Escherichia coli with a Tripeptide Deletion (Gly286 Ser287 Asp288) on the H10 Helix

Yamaguchi, Y., Sato, G., Yamagata, Y., Wachino, J., Arakawa, Y., Kurosaki, H.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 540-543

Released	2009-03-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	AmpC (protein)
Unique Ligands	IPA, NA

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3L6N \| pdb_00003l6n	Download File View File

Crystal structure of metallo-beta-lactamase IND-7

Yamaguchi, Y., Kurosaki, H., Yamagata, Y.

(2010) J Biochem 147: 905-915

Released	2010-04-14
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Chryseobacterium indologenes
Macromolecule	metallo-beta-lactamase (protein)
Unique Ligands	SO4, ZN

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4UBQ \| pdb_00004ubq	Download File View File

Crystal Structure of IMP-2 Metallo-beta-Lactamase from Acinetobacter spp.

Yamaguchi, Y., Matsueda, S., Matsunaga, K., Takashio, N., Toma-Fukai, S., Yamagata, Y., Shibata, N., Wachino, J., Shibayama, K., Arakawa, Y., Kurosaki, H.

(2015) Biol Pharm Bull 38: 96-101

Released	2014-12-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Acinetobacter baumannii
Macromolecule	Beta-lactamase (protein)
Unique Ligands	ACT, ZN

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7DTM \| pdb_00007dtm	Download File View File

Crystal structure of metallo-beta-lactamase IMP-1 in complex with citrate.

Yamaguchi, Y., Kurosaki, H.

(2021) J Med Chem 64: 10019-10026

Released	2021-08-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Serratia marcescens
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	FLC, ZN

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7DTN \| pdb_00007dtn	Download File View File

Crystal structure of metallo-beta-lactamase IMP-1 mutant (D120E) in complex with citrate.

Yamaguchi, Y., Kurosaki, H.

(2021) J Med Chem 64: 10019-10026

Released	2021-08-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Serratia marcescens
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	AE3, FLC, ZN