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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Lockyer, M."

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Search Summary

This query matches 25 Structures.

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Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	Staphylococcus aureus (9)
	Escherichia coli (8)
	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74 (2)
	Staphylococcus aureus subsp. aureus MRSA252 (2)
	human respiratory syncytial virus (2)
	Mycobacterium tuberculosis (1)
	Salmonella enterica (1)
	Salmonella enterica subsp. enterica serovar Typhimurium (1)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (1)

Taxonomy

	Bacteria (25)
	Riboviria (2)

Experimental Method

X-RAY DIFFRACTION (25)

Polymer Entity Type

	Protein (25)
	RNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (10)
	2.5 - 3.0 (5)
	3.5 - 4.0 (2)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (14)
	2010 - 2014 (6)

Enzyme Classification Name

	Transferases (10)
	Lyases (7)
	Hydrolases (2)
	Oxidoreductases (2)

Symmetry Type

	Cyclic (17)
	Asymmetric (8)

SCOP Classification

	Alpha and beta proteins (a/b) (16)
	Alpha and beta proteins (a+b) (4)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 25 Structures

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1SFJ \| pdb_00001sfj	Download File View File

2.4A Crystal structure of Staphylococcus aureus type I 3-dehydroquinase, with 3-dehydroquinate bound

Nichols, C.E., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2004) Proteins 56: 625-628

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	3-dehydroquinate dehydratase (protein)
Unique Ligands	DHK

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1SFL \| pdb_00001sfl	Download File View File

1.9A Crystal structure of Staphylococcus aureus type I 3-dehydroquinase, apo form

Nichols, C.E., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2004) Proteins 56: 625-628

Released	2004-10-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus subsp. aureus MRSA252
Macromolecule	3-dehydroquinate dehydratase (protein)

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1T4B \| pdb_00001t4b	Download File View File

1.6 Angstrom structure of Esherichia coli aspartate-semialdehyde dehydrogenase.

Nichols, C.E., Dhaliwal, B., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2004) J Mol Biology 341: 797-806

Released	2004-07-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Aspartate-semialdehyde dehydrogenase (protein)
Unique Ligands	NA

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1T4D \| pdb_00001t4d	Download File View File

Crystal structure of Escherichia coli aspartate beta-semialdehyde dehydrogenase (EcASADH), at 1.95 Angstrom resolution

Nichols, C.E., Dhaliwal, B., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2004) J Mol Biology 341: 797-806

Released	2004-08-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Aspartate-semialdehyde dehydrogenase (protein)

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1U8A \| pdb_00001u8a	Download File View File

Crystal Structure of Mycobacterium Tuberculosis Shikimate Kinase in Complex with Shikimate and ADP at 2.15 Angstrom Resolution

Dhaliwal, B., Nichols, C.E., Ren, J., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2004) FEBS Lett 574: 49-54

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Shikimate kinase (protein)
Unique Ligands	ADP, CL, SKM

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1XAG \| pdb_00001xag	Download File View File

CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+, NAD+ AND CARBAPHOSPHONATE

Nichols, C.E., Ren, J., Leslie, K., Dhaliwal, B., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2004) J Mol Biology 343: 533-546

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Staphylococcus aureus
Macromolecule	3-dehydroquinate synthase (protein)
Unique Ligands	CL, CRB, NAD, ZN

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1XAH \| pdb_00001xah	Download File View File

CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+ AND NAD+

Nichols, C.E., Ren, J., Leslie, K., Dhaliwal, B., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2004) J Mol Biology 343: 533-546

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	3-dehydroquinate synthase (protein)
Unique Ligands	NAD, ZN

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1XAI \| pdb_00001xai	Download File View File

CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+, NAD+ AND CARBAPHOSPHONATE

Nichols, C.E., Ren, J., Leslie, K., Dhaliwal, B., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2004) J Mol Biology 343: 533-546

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	3-dehydroquinate synthase (protein)
Unique Ligands	CRB, ZN

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1XAJ \| pdb_00001xaj	Download File View File

CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+, NAD+ AND CARBAPHOSPHONATE

Nichols, C.E., Ren, J., Leslie, K., Dhaliwal, B., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2004) J Mol Biology 343: 533-546

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Staphylococcus aureus
Macromolecule	3-dehydroquinate synthase (protein)
Unique Ligands	CRB, NAD, ZN

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1XAL \| pdb_00001xal	Download File View File

CRYSTAL STRUCTURE OF STAPHLYOCOCCUS AUREUS 3-DEHYDROQUINATE SYNTHASE (DHQS) IN COMPLEX WITH ZN2+, NAD+ AND CARBAPHOSPHONATE (SOAK)

Nichols, C.E., Ren, J., Leslie, K., Dhaliwal, B., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2004) J Mol Biology 343: 533-546

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Staphylococcus aureus
Macromolecule	3-dehydroquinate synthase (protein)
Unique Ligands	CRB, NAD, ZN

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2BZ0 \| pdb_00002bz0	Download File View File

Crystal Structure of E. coli GTP cyclohydrolase II in complex with GTP analogue, GMPcPP, and Zinc

Ren, J., Kotaka, M., Lockyer, M., Lamb, H.K., Hawkins, A.R., Stammers, D.K.

(2005) J Biological Chem 280: 36912

Released	2005-08-19
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	GTP CYCLOHYDROLASE II (protein)
Unique Ligands	G2P, MG, ZN

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2BZ1 \| pdb_00002bz1	Download File View File

CRYSTAL STRUCTURE OF APO E. COLI GTP CYCLOHYDROLASE II

Ren, J., Kotaka, M., Lockyer, M., Lamb, H.K., Hawkins, A.R., Stammers, D.K.

(2005) J Biological Chem 280: 36912

Released	2005-08-19
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Escherichia coli
Macromolecule	GTP CYCLOHYDROLASE II (protein)
Unique Ligands	GOL, SO4, TAU, ZN

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2CCG \| pdb_00002ccg	Download File View File

Crystal structure of His-tagged S. aureus thymidylate kinase complexed with thymidine monophosphate (TMP)

Kotaka, M., Dhaliwal, B., Ren, J., Nichols, C.E., Angell, R., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2006) Protein Sci 15: 774

Released	2006-03-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Staphylococcus aureus
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	TMP

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2CCJ \| pdb_00002ccj	Download File View File

Crystal structure of S. aureus thymidylate kinase complexed with thymidine monophosphate

Kotaka, M., Dhaliwal, B., Ren, J., Nichols, C.E., Angell, R., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2006) Protein Sci 15: 774

Released	2006-03-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	CL, EDO, TMP

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2CCK \| pdb_00002cck	Download File View File

CRYSTAL STRUCTURE OF UNLIGANDED S. AUREUS THYMIDYLATE KINASE

Kotaka, M., Dhaliwal, B., Ren, J., Nichols, C.E., Angell, R., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2006) Protein Sci 15: 774

Released	2006-03-08
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Staphylococcus aureus
Macromolecule	THYMIDYLATE KINASE (protein)
Unique Ligands	CL, EDO

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2J0W \| pdb_00002j0w	Download File View File

Crystal structure of E. coli aspartokinase III in complex with aspartate and ADP (R-state)

Kotaka, M., Ren, J., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2006) J Biological Chem 281: 31544

Released	2006-08-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	LYSINE-SENSITIVE ASPARTOKINASE 3 (protein)
Unique Ligands	ADP, ASP, CL, MG

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2J0X \| pdb_00002j0x	Download File View File

CRYSTAL STRUCTURE OF E. COLI ASPARTOKINASE III IN COMPLEX WITH LYSINE AND ASPARTATE (T-STATE)

Kotaka, M., Ren, J., Lockyer, M., Hawkins, A.R., Stammers, D.K.

(2006) J Biological Chem 281: 31544

Released	2006-08-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	LYSINE-SENSITIVE ASPARTOKINASE 3 (protein)
Unique Ligands	ASP, LYS, PO4

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2J41 \| pdb_00002j41	Download File View File

Crystal structure of Staphylococcus aureus guanylate monophosphate kinase

El Omari, K., Dhaliwal, B., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2006) Acta Crystallogr Sect F Struct Biol Cryst Commun 62: 949

Released	2006-10-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Staphylococcus aureus
Macromolecule	GUANYLATE KINASE (protein)
Unique Ligands	5GP, K, SO4

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2P1R \| pdb_00002p1r	Download File View File

Crystal structure of Salmonella typhimurium YegS, a putative lipid kinase homologous to eukaryotic sphingosine and diacylglycerol kinases.

Nichols, C.E., Lamb, H.K., Lockyer, M., Charles, I.G., Pyne, S., Hawkins, A.R., Stammers, D.K.

(2007) Proteins 68: 13-25

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Lipid kinase yegS (protein)
Unique Ligands	CA, CL, NA

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2XF4 \| pdb_00002xf4	Download File View File

Crystal structure of Salmonella enterica serovar typhimurium YcbL

Stamp, A., Owen, P., El Omari, K., Nichols, C., Lockyer, M., Lamb, H., Charles, I., Hawkins, A.R., Stammers, D.K.

(2010) Protein Sci 19: 1897

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica
Macromolecule	HYDROXYACYLGLUTATHIONE HYDROLASE (protein)
Unique Ligands	PG4, ZN

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2Y7I \| pdb_00002y7i	Download File View File

Structural basis for high arginine specificity in Salmonella typhimurium periplasmic binding protein STM4351.

Stamp, A.L., Owen, P., El Omari, K., Lockyer, M., Lamb, H.K., Charles, I.G., Hawkins, A.R., Stammers, D.K.

(2011) Proteins 79: 2352

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	STM4351 (protein)
Unique Ligands	ACT, ARG, GOL, ZN

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2YHM \| pdb_00002yhm	Download File View File

Structure of respiratory syncytial virus nucleocapsid protein, P212121 crystal form

El Omari, K., Dhaliwal, B., Ren, J., Abrescia, N.G.A., Lockyer, M., Powell, K.L., Hawkins, A.R., Stammers, D.K.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1179

Released	2012-01-25
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli human respiratory syncytial virus
Macromolecule	NUCLEOPROTEIN (protein) RNA (nucleic acid)

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3ZET \| pdb_00003zet	Download File View File

Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer.

Nichols, C.E., Lamb, H.K., Thompson, P., El Omari, K., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2013) Protein Sci 22: 628

Released	2013-03-20
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
Macromolecule	PROBABLE TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN GCP (protein) PUTATIVE M22 PEPTIDASE YEAZ (protein)
Unique Ligands	AMP, CD, TAM

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3ZEU \| pdb_00003zeu	Download File View File

Structure of a Salmonella typhimurium YgjD-YeaZ heterodimer bound to ATPgammaS

Nichols, C.E., Lamb, H.K., Thompson, P., El Omari, K., Lockyer, M., Charles, I., Hawkins, A.R., Stammers, D.K.

(2013) Protein Sci 22: 628

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.653 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
Macromolecule	PROBABLE TRNA THREONYLCARBAMOYLADENOSINE BIOSYNTHESIS PROTEIN GCP (protein) PUTATIVE M22 PEPTIDASE YEAZ (protein)
Unique Ligands	ADP, AGS, CL, MG, ZN

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4V5V \| pdb_00004v5v	Download File View File

Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form

El Omari, K., Dhaliwal, B., Ren, J., Abrescia, N.G.A., Lockyer, M., Powell, K.L., Hawkins, A.R., Stammers, D.K.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1179

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli human respiratory syncytial virus
Macromolecule	RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN (protein) RNA (nucleic acid)

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1SFJ | pdb_00001sfj

1SFL | pdb_00001sfl

1T4B | pdb_00001t4b

1T4D | pdb_00001t4d

1U8A | pdb_00001u8a

1XAG | pdb_00001xag

1XAH | pdb_00001xah

1XAI | pdb_00001xai

1XAJ | pdb_00001xaj

1XAL | pdb_00001xal

2BZ0 | pdb_00002bz0

2BZ1 | pdb_00002bz1

2CCG | pdb_00002ccg

2CCJ | pdb_00002ccj

2CCK | pdb_00002cck

2J0W | pdb_00002j0w

2J0X | pdb_00002j0x

2J41 | pdb_00002j41

2P1R | pdb_00002p1r

2XF4 | pdb_00002xf4

2Y7I | pdb_00002y7i

2YHM | pdb_00002yhm

3ZET | pdb_00003zet

3ZEU | pdb_00003zeu

4V5V | pdb_00004v5v