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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Otero, L.H."

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Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Xanthomonas campestris pv. campestris str. 8004 (7)
	Arachis hypogaea (6)
	Staphylococcus aureus subsp. aureus Mu50 (5)
	Brucella melitensis bv. 1 str. 16M (3)
	Mal de Rio Cuarto virus (3)
	Bizionia argentinensis JUB59 (2)
	Brucella abortus (2)
	Brucella abortus 2308 (2)
	Brucella abortus bv. 1 str. 9-941 (2)
	Escherichia coli O157:H7 (2)

More...

Taxonomy

	Bacteria (30)
	Eukaryota (8)
	Riboviria (3)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (36)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

Protein (41)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (10)
	2.0 - 2.5 (8)
	2.5 - 3.0 (10)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (11)
	2020 - 2024 (17)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (6)
	Oxidoreductases (2)
	Isomerases (1)
	Translocases (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (20)
	Dihedral (5)

SCOP Classification

	All beta proteins (7)
	Alpha and beta proteins (a+b) (8)
	Multi-domain proteins (alpha and beta) (7)
	Alpha and beta proteins (a/b) (3)
	Artifacts (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 41 Structures

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3ZFZ \| pdb_00003zfz	Download File View File

Crystal structure of ceftaroline acyl-PBP2a from MRSA with non- covalently bound ceftaroline and muramic acid at allosteric site obtained by soaking

Otero, L.H., Rojas-Altuve, A., Hermoso, J.A.

(2013) Proc Natl Acad Sci U S A 110: 16808-16813

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	PENICILLIN BINDING PROTEIN 2 PRIME (protein)
Unique Ligands	1W8, AI8, CD, CL, MUR

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3ZG0 \| pdb_00003zg0	Download File View File

Crystal structure of ceftaroline acyl-PBP2a from MRSA with non- covalently bound ceftaroline and muramic acid at allosteric site obtained by cocrystallization

Otero, L.H., Rojas-Altuve, A., Hermoso, J.A.

(2013) Proc Natl Acad Sci U S A 110: 16808

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	PENICILLIN BINDING PROTEIN 2 PRIME (protein)
Unique Ligands	1W8, AI8, CD, CL, MUR

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3ZG5 \| pdb_00003zg5	Download File View File

Crystal structure of PBP2a from MRSA in complex with peptidoglycan analogue at allosteric

Otero, L.H., Rojas-Altuve, A., Hermoso, J.A.

(2013) Proc Natl Acad Sci U S A 110: 16808

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50 synthetic construct
Macromolecule	PEPTIDOGLYCAN ANALOGUE (protein) Penicillin binding protein 2 prime (protein)
Unique Ligands	AMV, CD, CL

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4AS2 \| pdb_00004as2	Download File View File

Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Monoclinic form

Infantes, L., Otero, L.H., Albert, A.

(2012) J Mol Biology 423: 503

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PHOSPHORYLCHOLINE PHOSPHATASE (protein)
Unique Ligands	BTB, CL, IOD, MG

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4AS3 \| pdb_00004as3	Download File View File

Pseudomonas Aeruginosa Phosphorylcholine Phosphatase. Orthorhombic form

Infantes, L., Otero, L.H., Albert, A.

(2012) J Mol Biology 423: 503

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PHOSPHORYLCHOLINE PHOSPHATASE (protein)
Unique Ligands	BTB, CL, MG

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4BHY \| pdb_00004bhy	Download File View File

Structure of alanine racemase from Aeromonas hydrophila

Otero, L.H., Carrasco-Lopez, C., Bernardo-Garcia, N., Hermoso, J.A.

(2014) Acta Crystallogr D Biol Crystallogr 70: 79

Released	2014-01-15
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Aeromonas hydrophila subsp. hydrophila
Macromolecule	ALANINE RACEMASE (protein)

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4BL2 \| pdb_00004bl2	Download File View File

Crystal structure of PBP2a clinical mutant E150K from MRSA

Otero, L.H., Rojas-Altuve, A., Hermoso, J.A.

(2014) J Am Chem Soc 136: 9814

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Staphylococcus aureus
Macromolecule	PENICILLIN BINDING PROTEIN 2 PRIME (protein)
Unique Ligands	CD, CL

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4BL3 \| pdb_00004bl3	Download File View File

Crystal structure of PBP2a clinical mutant N146K from MRSA

Otero, L.H., Rojas-Altuve, A., Carrasco-Lopez, C., Hermoso, J.A.

(2014) J Am Chem Soc 136: 9814

Released	2014-05-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Staphylococcus aureus
Macromolecule	PENICILLIN BINDING PROTEIN 2 PRIME (protein)
Unique Ligands	CD, CL, MUR

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4CJN \| pdb_00004cjn	Download File View File

Crystal structure of PBP2a from MRSA in complex with quinazolinone ligand

Bouley, R., Otero, L.H., Rojas-Altuve, A., Hermoso, J.A.

(2015) J Am Chem Soc 137: 1738

Released	2015-02-11
Method	X-RAY DIFFRACTION 1.947 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	PENICILLIN BINDING PROTEIN 2 PRIME (protein)
Unique Ligands	CD, CL, MUR, QNZ

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4CPK \| pdb_00004cpk	Download File View File

Crystal structure of PBP2a double clinical mutant N146K-E150K from MRSA

Otero, L.H., Rojas-Altuve, A., Hermoso, J.A.

(2014) J Am Chem Soc 136: 9814

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Penicillin binding protein 2 prime (protein)
Unique Ligands	CD, CL, MUR

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4D6X \| pdb_00004d6x	Download File View File

Crystal structure of the receiver domain of NtrX from Brucella abortus

Klinke, S., Fernandez, I., Carrica, M.C., Otero, L.H., Goldbaum, F.A.

(2015) J Mol Biology 427: 3258

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Brucella abortus
Macromolecule	BACTERIAL REGULATORY, FIS FAMILY PROTEIN (protein)
Unique Ligands	IMD

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4D6Y \| pdb_00004d6y	Download File View File

Crystal structure of the receiver domain of NtrX from Brucella abortus in complex with beryllofluoride and magnesium

Otero, L.H., Fernandez, I., Carrica, M.C., Klinke, S., Goldbaum, F.A.

(2015) J Mol Biology 427: 3258

Released	2015-07-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Brucella abortus
Macromolecule	BACTERIAL REGULATORY, FIS FAMILY PROTEIN (protein)
Unique Ligands	BEF, MG

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4OA3 \| pdb_00004oa3	Download File View File

Crystal structure of the BA42 protein from BIZIONIA ARGENTINENSIS

Otero, L.H., Klinke, S., Aran, M., Pellizza, L., Goldbaum, F.A., Cicero, D.

(2014) Proteins 82: 3062-3078

Released	2014-08-20
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Bizionia argentinensis JUB59
Macromolecule	PROTEIN BA42 (protein)
Unique Ligands	CA

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5AKP \| pdb_00005akp	Download File View File

Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP from Xanthomonas campestris bound to BV chromophore

Otero, L.H., Klinke, S., Goldbaum, F.A., Bonomi, H.R.

(2016) J Mol Biology 428: 3702

Released	2016-05-04
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Xanthomonas campestris pv. campestris str. 8004
Macromolecule	PHYTOCHROME-LIKE PROTEIN (protein)
Unique Ligands	BLA, CL, TRS

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5ANP \| pdb_00005anp	Download File View File

CRYSTAL STRUCTURE OF THE BA41 PROTEIN FROM BIZIONIA ARGENTINENSIS

Otero, L.H., Cerutti, M.L., Goldbaum, F.A., Klinke, S.

(2017) J Struct Biol 197: 201-209

Released	2016-11-16
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Bizionia argentinensis JUB59
Macromolecule	BA41 (protein)

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5DBQ \| pdb_00005dbq	Download File View File

Crystal structure of insect thioredoxin at 1.95 Angstroms

Klinke, S., Tejedor, M.D., Cerutti, M.L., Giacometti, R., Otero, L.H., Goldbaum, F.A., Zavala, J.A., Wolosiuk, R.A., Pagano, E.A.

To be published

Released	2016-08-24
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Anticarsia gemmatalis
Macromolecule	Thioredoxin (protein)

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5KZL \| pdb_00005kzl	Download File View File

Structure of Heme Oxygenase from Leptospira interrogans

Klinke, S., Soldano, A., Otero, L.H., Rivera, M., Catalano-Dupuy, D.L., Ceccarelli, E.A.

(2017) PLoS One 12: e0182535-e0182535

Released	2017-07-26
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Leptospira interrogans
Macromolecule	Heme oxygenase (protein)
Unique Ligands	HEM

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5U7N \| pdb_00005u7n	Download File View File

CRYSTAL STRUCTURE OF A CHIMERIC CUA DOMAIN (SUBUNIT II) OF CYTOCHROME BA3 FROM THERMUS THERMOPHILUS WITH THE AMICYANIN LOOP

Otero, L.H., Klinke, S., Espinoza-Cara, A., Vila, A.J.

(2018) Chem Sci 9: 6692-6702

Released	2017-11-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	Cytochrome c oxidase subunit 2 (protein)
Unique Ligands	CU, MPD

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5UYR \| pdb_00005uyr	Download File View File

Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP mutant D199A from Xanthomonas campestris

Otero, L.H., Klinke, S., Goldbaum, F.A., Bonomi, H.R.

(2021) FEBS J 288: 5986-6002

Released	2018-02-28
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Xanthomonas campestris pv. campestris str. 8004
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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6NDO \| pdb_00006ndo	Download File View File

Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP mutant L193N from Xanthomonas campestris

Otero, L.H., Sirigu, S., Klinke, S., Rinaldi, J., Conforte, V., Malamud, F., Goldbaum, F.A., Chavas, L., Bonomi, H.R.

(2021) FEBS J 288: 5986-6002

Released	2019-12-18
Method	X-RAY DIFFRACTION 3.58 Å
Organisms	Xanthomonas campestris pv. campestris str. 8004
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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6NDP \| pdb_00006ndp	Download File View File

Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP mutant L193Q from Xanthomonas campestris

Otero, L.H., Sirigu, S., Klinke, S., Rinaldi, J., Conforte, V., Malamud, F., Goldbaum, F.A., Chavas, L., Bonomi, H.R.

(2021) FEBS J 288: 5986-6002

Released	2019-12-18
Method	X-RAY DIFFRACTION 3.89 Å
Organisms	Xanthomonas campestris pv. campestris str. 8004
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

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6PH2 \| pdb_00006ph2	Download File View File

Complete LOV domain from the LOV-HK sensory protein from Brucella abortus (mutant C69S, construct 15-155)

Rinaldi, J., Otero, L.H., Fernandez, I., Goldbaum, F.A., Shin, H., Yang, X., Klinke, S.

(2021) mBio 12:

Released	2020-12-30
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Brucella melitensis bv. 1 str. 16M
Macromolecule	Blue-light-activated histidine kinase (protein)
Unique Ligands	FMN

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6PH3 \| pdb_00006ph3	Download File View File

LOV-PAS construct from the LOV-HK sensory protein from Brucella abortus (dark-adapted, construct 15-273)

Rinaldi, J., Otero, L.H., Fernandez, I., Goldbaum, F.A., Shin, H., Yang, X., Klinke, S.

(2021) mBio 12:

Released	2020-12-30
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Brucella melitensis bv. 1 str. 16M
Macromolecule	Blue-light-activated histidine kinase (protein)
Unique Ligands	FMN

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6PH4 \| pdb_00006ph4	Download File View File

Full length LOV-PAS-HK construct from the LOV-HK sensory protein from Brucella abortus (light-adapted, construct 15-489)

Rinaldi, J., Otero, L.H., Fernandez, I., Goldbaum, F.A., Shin, H., Yang, X., Klinke, S.

(2021) mBio 12:

Released	2020-12-30
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Brucella melitensis bv. 1 str. 16M
Macromolecule	Blue-light-activated histidine kinase (protein)
Unique Ligands	ACP, CL, FMN, MG

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6PL0 \| pdb_00006pl0	Download File View File

Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP from Xanthomonas campestris in the Pr state bound to BV chromophore

Otero, L.H., Sirigu, S., Klinke, S., Goldbaum, F., Chavas, L., Rinaldi, J., Bonomi, H.R.

(2021) Sci Adv 7: eabh1097-eabh1097

Released	2020-12-30
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Xanthomonas campestris pv. campestris str. 8004
Macromolecule	Bacteriophytochrome (protein)
Unique Ligands	BLA

1 to 25 of 41 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3ZFZ | pdb_00003zfz

3ZG0 | pdb_00003zg0

3ZG5 | pdb_00003zg5

4AS2 | pdb_00004as2

4AS3 | pdb_00004as3

4BHY | pdb_00004bhy

4BL2 | pdb_00004bl2

4BL3 | pdb_00004bl3

4CJN | pdb_00004cjn

4CPK | pdb_00004cpk

4D6X | pdb_00004d6x

4D6Y | pdb_00004d6y

4OA3 | pdb_00004oa3

5AKP | pdb_00005akp

5ANP | pdb_00005anp

5DBQ | pdb_00005dbq

5KZL | pdb_00005kzl

5U7N | pdb_00005u7n

5UYR | pdb_00005uyr

6NDO | pdb_00006ndo

6NDP | pdb_00006ndp

6PH2 | pdb_00006ph2

6PH3 | pdb_00006ph3

6PH4 | pdb_00006ph4

6PL0 | pdb_00006pl0