RCSB PDB: Search

2XN9 \| pdb_00002xn9	Download File View File

Crystal structure of the ternary complex between human T cell receptor, staphylococcal enterotoxin H and human major histocompatibility complex class II

Saline, M., Rodstrom, K.E.J., Fischer, G., Orekhov, V.Y., Karlsson, B.G., Lindkvist-Petersson, K.

(2010) Nat Commun 1: 119

Released	2010-11-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Influenza A virus Staphylococcus aureus
Macromolecule	Unique protein chains: 6
Unique Ligands	GOL, NA

Explore in 3D

2XNA \| pdb_00002xna	Download File View File

Crystal structure of the complex between human T cell receptor and staphylococcal enterotoxin

Saline, M., Rodstrom, K.E.J., Fischer, G., Orekhov, V.Y., Karlsson, B.G., Lindkvist-Petersson, K.

(2010) Nat Commun 1: 119

Released	2010-11-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	ENTEROTOXIN H (protein) T CELL RECEPTOR ALPHA CHAIN C REGION (protein) T CELL RECEPTOR BETA-1 CHAIN C REGION (protein)
Unique Ligands	GOL, NA

Explore in 3D

4C56 \| pdb_00004c56	Download File View File

X-ray structure of the complex between staphylococcal enterotoxin B, T cell receptor and major histocompatibility complex class II

Rodstrom, K.E.J., Elbing, K., Lindkvist-Petersson, K.

(2014) J Immunol 193: 1998

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Influenza A virus Staphylococcus aureus
Macromolecule	Unique protein chains: 6
Unique Ligands	GOL

Explore in 3D

4UDT \| pdb_00004udt	Download File View File

T cell receptor (TRAV22,TRBV7-9) structure

Rodstrom, K.E.J., Regenthal, P., Lindkvist-Petersson, K.

(2015) PLoS One 10: 01318

Released	2015-06-24
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN TRBV7-9, T-CELL RECEPTOR BETA-2 CHAIN C REGION (protein) T CELL RECEPTOR ALPHA CHAIN, T-CELL RECEPTOR ALPHA CHAIN C REGION (protein)
Unique Ligands	GOL

Explore in 3D

4UDU \| pdb_00004udu	Download File View File

Crystal structure of staphylococcal enterotoxin E in complex with a T cell receptor

Rodstrom, K.E.J., Regenthal, P., Lindkvist-Petersson, K.

(2015) PLoS One 10: 01319

Released	2015-06-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	ENTEROTOXIN TYPE E (protein) PROTEIN TRBV7-9, T-CELL RECEPTOR BETA-2 CHAIN C REGION (protein) T CELL RECEPTOR ALPHA CHAIN, T-CELL RECEPTOR ALPHA CHAIN C REGION (protein)
Unique Ligands	NA, ZN

Explore in 3D

5FK9 \| pdb_00005fk9	Download File View File

Crystal structure of staphylococcal enterotoxin A F47A mutant in complex with a T cell receptor

Rodstrom, K.E.J., Regenthal, P., Lindkvist-Petersson, K.

(2016) Sci Rep 6: 25796

Released	2016-05-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	ENTEROTOXIN TYPE A (protein) T CELL RECEPTOR ALPHA CHAIN (protein) T CELL RECEPTOR BETA CHAIN (protein)

Explore in 3D

5FKA \| pdb_00005fka	Download File View File

Crystal structure of staphylococcal enterotoxin E in complex with a T cell receptor

Rodstrom, K.E.J., Regenthal, P., Lindkvist-Petersson, K.

(2016) Sci Rep 6: 25796

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	STAPHYLOCOCCAL ENTEROTOXIN E (protein) T CELL RECEPTOR ALPHA CHAIN (protein) T CELL RECEPTOR BETA CHAIN (protein)
Unique Ligands	ZN

Explore in 3D

6RV2 \| pdb_00006rv2	Download File View File

Crystal structure of the human two pore domain potassium ion channel TASK-1 (K2P3.1) in a closed conformation

Rodstrom, K.E.J., Pike, A.C.W., Zhang, W., Quigley, A., Speedman, D., Mukhopadhyay, S.M.M., Shrestha, L., Chalk, R., Venkaya, S., Bushell, S.R., Tessitore, A., Burgess-Brown, N., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

(2020) Nature 582: 443-447

Released	2019-08-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Potassium channel subfamily K member 3 (protein)
Unique Ligands	DMU, K, PC1, Y01

Explore in 3D

6RV3 \| pdb_00006rv3	Download File View File

Crystal structure of the human two pore domain potassium ion channel TASK-1 (K2P3.1) in a closed conformation with a bound inhibitor BAY 1000493

Rodstrom, K.E.J., Pike, A.C.W., Zhang, W., Quigley, A., Speedman, D., Mukhopadhyay, S.M.M., Shrestha, L., Chalk, R., Venkaya, S., Bushell, S.R., Tessitore, A., Burgess-Brown, N., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

(2020) Nature 582: 443-447

Released	2019-08-07
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Potassium channel subfamily K member 3 (protein)
Unique Ligands	DMU, K, KKQ, PC1, Y01

Explore in 3D

6RV4 \| pdb_00006rv4	Download File View File

Crystal structure of the human two pore domain potassium ion channel TASK-1 (K2P3.1) in a closed conformation with a bound inhibitor BAY 2341237

Rodstrom, K.E.J., Pike, A.C.W., Zhang, W., Quigley, A., Speedman, D., Mukhopadhyay, S.M.M., Shrestha, L., Chalk, R., Venkaya, S., Bushell, S.R., Tessitore, A., Burgess-Brown, N., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

(2020) Nature 582: 443-447

Released	2019-08-07
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Potassium channel subfamily K member 3 (protein)
Unique Ligands	K, KKZ, PC1, Y01

Explore in 3D

6Y7F \| pdb_00006y7f	Download File View File

Crystal structure of human ELOVL fatty acid elongase 7 (ELOVL7)

Nie, L., Pike, A.C.W., Bushell, S.R., Chu, A., Cole, V., Speedman, D., Rodstrom, K.E.J., Kupinska, K., Shrestha, L., Mukhopadhyay, S.M.M., Burgess-Brown, N.A., Love, J., Edwards, A.M., Arrowsmith, C.H., Bountra, C., Carpenter, E.P., Structural Genomics Consortium (SGC)

To be published

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.052 Å
Organisms	Homo sapiens
Macromolecule	Elongation of very long chain fatty acids protein 7 (protein)
Unique Ligands	37X, CL, OFN

Explore in 3D

8P2W \| pdb_00008p2w	Download File View File

Structure of human SIT1 (focussed map / refinement)

Li, H.Z., Pike, A.C.W., Chi, G., Hansen, J.S., Lee, S.G., Rodstrom, K.E.J., Bushell, S.R., Speedman, D., Evans, A., Wang, D., He, D., Shrestha, L., Nasrallah, C., Chalk, R., Moreira, T., MacLean, E.M., Marsden, B., Bountra, C., Burgess-Brown, N.A., Dafforn, T.R., Carpenter, E.P., Sauer, D.B.

(2024) Nat Commun 15: 5503-5503

Released	2024-06-12
Method	ELECTRON MICROSCOPY 3.76 Å
Organisms	Homo sapiens
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Sodium- and chloride-dependent transporter XTRP3 (protein)
Unique Ligands	NAG

Explore in 3D

8P2X \| pdb_00008p2x	Download File View File

Structure of human SIT1:ACE2 complex (open PD conformation)

Li, H.Z., Pike, A.C.W., Chi, G., Hansen, J.S., Lee, S.G., Rodstrom, K.E.J., Bushell, S.R., Speedman, D., Evans, A., Wang, D., He, D., Shrestha, L., Nasrallah, C., Chalk, R., Moreira, T., MacLean, E.M., Marsden, B., Bountra, C., Burgess-Brown, N.A., Dafforn, T.R., Carpenter, E.P., Sauer, D.B.

(2024) Nat Commun 15: 5503-5503

Released	2024-06-12
Method	ELECTRON MICROSCOPY 3.59 Å
Organisms	Homo sapiens
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Sodium- and chloride-dependent transporter XTRP3 (protein)
Unique Ligands	NAG, NDG, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

8P2Y \| pdb_00008p2y	Download File View File

Structure of human SIT1:ACE2 complex (closed PD conformation)

Li, H.Z., Pike, A.C.W., Chi, G., Hansen, J.S., Lee, S.G., Rodstrom, K.E.J., Bushell, S.R., Speedman, D., Evans, A., Wang, D., He, D., Shrestha, L., Nasrallah, C., Chalk, R., Moreira, T., MacLean, E.M., Marsden, B., Bountra, C., Burgess-Brown, N.A., Dafforn, T.R., Carpenter, E.P., Sauer, D.B.

(2024) Nat Commun 15: 5503-5503

Released	2024-06-12
Method	ELECTRON MICROSCOPY 3.46 Å
Organisms	Homo sapiens
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Sodium- and chloride-dependent transporter XTRP3 (protein)
Unique Ligands	NAG, NDG, ZN
Unique branched monosaccharides	BMA, NAG

Explore in 3D

8P2Z \| pdb_00008p2z	Download File View File

Structure of human SIT1 bound to L-pipecolate (focussed map / refinement)

Li, H.Z., Pike, A.C.W., Chi, G., Hansen, J.S., Lee, S.G., Rodstrom, K.E.J., Bushell, S.R., Speedman, D., Evans, A., Wang, D., He, D., Shrestha, L., Nasrallah, C., Chalk, R., Moreira, T., MacLean, E.M., Marsden, B., Bountra, C., Burgess-Brown, N.A., Dafforn, T.R., Carpenter, E.P., Sauer, D.B.

(2024) Nat Commun 15: 5503-5503

Released	2024-06-12
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Sodium- and chloride-dependent transporter XTRP3 (protein)
Unique Ligands	CL, NAG, YCP

Explore in 3D

8P30 \| pdb_00008p30	Download File View File

Structure of human SIT1:ACE2 complex (open PD conformation) bound to L-pipecolate

Li, H.Z., Pike, A.C.W., Chi, G., Hansen, J.S., Lee, S.G., Rodstrom, K.E.J., Bushell, S.R., Speedman, D., Evans, A., Wang, D., He, D., Shrestha, L., Nasrallah, C., Chalk, R., Moreira, T., MacLean, E.M., Marsden, B., Bountra, C., Burgess-Brown, N.A., Dafforn, T.R., Carpenter, E.P., Sauer, D.B.

(2024) Nat Commun 15: 5503-5503

Released	2024-06-12
Method	ELECTRON MICROSCOPY 3.29 Å
Organisms	Homo sapiens
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Sodium- and chloride-dependent transporter XTRP3 (protein)
Unique Ligands	CL, NAG, NDG, YCP, ZN
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

8P31 \| pdb_00008p31	Download File View File

Structure of human SIT1:ACE2 complex (closed PD conformation) bound to L-pipecolate

Li, H.Z., Pike, A.C.W., Chi, G., Hansen, J.S., Lee, S.G., Rodstrom, K.E.J., Bushell, S.R., Speedman, D., Evans, A., Wang, D., He, D., Shrestha, L., Nasrallah, C., Chalk, R., Moreira, T., MacLean, E.M., Marsden, B., Bountra, C., Burgess-Brown, N.A., Dafforn, T.R., Carpenter, E.P., Sauer, D.B.

(2024) Nat Commun 15: 5503-5503

Released	2024-06-12
Method	ELECTRON MICROSCOPY 3.24 Å
Organisms	Homo sapiens
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Sodium- and chloride-dependent transporter XTRP3 (protein)
Unique Ligands	NAG, NDG, YCP, ZN
Unique branched monosaccharides	BMA, NAG

Explore in 3D

8QZ1 \| pdb_00008qz1	Download File View File

Crystal structure of human two pore domain potassium ion channel TREK-2 (K2P10.1) in complex with a nanobody (Nb58)

Rodstrom, K.E.J., Pike, A.C.W., Baronina, A., Ang, J., Bushell, S.R., Chalk, R., Mukhopadhyay, S.M.M., Pardon, E., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Burgess-Brown, N.A., Tucker, S.J., Steyaert, J., Carpenter, E.P., Structural Genomics Consortium (SGC)

(2024) Nat Commun 15: 4173-4173

Released	2024-05-29
Method	X-RAY DIFFRACTION 3.588 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Isoform B of Potassium channel subfamily K member 10 (protein) Nanobody 58 (protein)
Unique Ligands	K

Explore in 3D

8QZ2 \| pdb_00008qz2	Download File View File

Crystal structure of human two pore domain potassium ion channel TREK-2 (K2P10.1) in complex with an inhibitory nanobody (Nb61)

Baronina, A., Pike, A.C.W., Rodstrom, K.E.J., Ang, J., Bushell, S.R., Chalk, R., Mukhopadhyay, S.M.M., Pardon, E., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Burgess-Brown, N.A., Tucker, S.J., Steyaert, J., Carpenter, E.P., Structural Genomics Consortium (SGC)

(2024) Nat Commun 15: 4173-4173

Released	2024-05-29
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Nanobody 61 (protein) Potassium channel subfamily K member 10 (protein)
Unique Ligands	K

Explore in 3D

8QZ3 \| pdb_00008qz3	Download File View File

Crystal structure of human two pore domain potassium ion channel TREK-2 (K2P10.1) in complex with an activatory nanobody (Nb67)

Baronina, A., Pike, A.C.W., Rodstrom, K.E.J., Ang, J., Bushell, S.R., Chalk, R., Mukhopadhyay, S.M.M., Pardon, E., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Burgess-Brown, N.A., Tucker, S.J., Steyaert, J., Carpenter, E.P., Structural Genomics Consortium (SGC)

(2024) Nat Commun 15: 4173-4173

Released	2024-05-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Nanobody 67 (protein) Potassium channel subfamily K member 10 (protein)
Unique Ligands	K, MPD

Explore in 3D

8QZ4 \| pdb_00008qz4	Download File View File

Crystal structure of human two pore domain potassium ion channel TREK-2 (K2P10.1) in complex with an activatory nanobody (Nb76)

Rodstrom, K.E.J., Pike, A.C.W., Baronina, A., Ang, J., Bushell, S.R., Chalk, R., Mukhopadhyay, S.M.M., Pardon, E., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Burgess-Brown, N.A., Tucker, S.J., Steyaert, J., Carpenter, E.P., Structural Genomics Consortium (SGC)

(2024) Nat Commun 15: 4173-4173

Released	2024-05-29
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Nanobody 76 (protein) Potassium channel subfamily K member 10 (protein)
Unique Ligands	BA, Y01

Explore in 3D

9FT7 \| pdb_00009ft7	Download File View File

Structure of the human two pore domain potassium ion channel THIK-1 (K2P13.1) in a closed conformation

Rodstrom, K.E.J., Tucker, S.J.

(2025) Nat Struct Mol Biol

Released	2025-03-05
Method	ELECTRON MICROSCOPY 3.16 Å
Organisms	Homo sapiens
Macromolecule	Potassium channel subfamily K member 13 (protein)
Unique Ligands	EIC, K

Explore in 3D

9G9V \| pdb_00009g9v	Download File View File

Structure of the human two pore domain potassium ion channel TASK-3 (K2P9.1)

Hall, P.H., Rodstrom, K.E.J., Tucker, S.J.

(2025) Structure 33: 115

Released	2024-12-18
Method	ELECTRON MICROSCOPY 3.32 Å
Organisms	Homo sapiens
Macromolecule	Potassium channel subfamily K member 9 (protein)
Unique Ligands	K, Y01

Explore in 3D

9G9W \| pdb_00009g9w	Download File View File

Structure of the human two pore domain potassium ion channel TASK-3 (K2P9.1) G236R mutant

Rodstrom, K.E.J., Hall, P.H., Tucker, S.J.

(2025) Structure 33: 115

Released	2024-12-18
Method	ELECTRON MICROSCOPY 2.48 Å
Organisms	Homo sapiens
Macromolecule	Potassium channel subfamily K member 9 (protein)
Unique Ligands	K, Y01

Explore in 3D

9G9X \| pdb_00009g9x	Download File View File

Structure of the human two pore domain potassium ion channel TASK-1 (K2P3.1)

Rodstrom, K.E.J., Hall, P.H., Tucker, S.J.

(2025) Structure 33: 115

Released	2024-12-18
Method	ELECTRON MICROSCOPY 3.13 Å
Organisms	Homo sapiens
Macromolecule	Potassium channel subfamily K member 3 (protein)
Unique Ligands	K, Y01

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2XN9 | pdb_00002xn9

2XNA | pdb_00002xna

4C56 | pdb_00004c56

4UDT | pdb_00004udt

4UDU | pdb_00004udu

5FK9 | pdb_00005fk9

5FKA | pdb_00005fka

6RV2 | pdb_00006rv2

6RV3 | pdb_00006rv3

6RV4 | pdb_00006rv4

6Y7F | pdb_00006y7f

8P2W | pdb_00008p2w

8P2X | pdb_00008p2x

8P2Y | pdb_00008p2y

8P2Z | pdb_00008p2z

8P30 | pdb_00008p30

8P31 | pdb_00008p31

8QZ1 | pdb_00008qz1

8QZ2 | pdb_00008qz2

8QZ3 | pdb_00008qz3

8QZ4 | pdb_00008qz4

9FT7 | pdb_00009ft7

9G9V | pdb_00009g9v

9G9W | pdb_00009g9w

9G9X | pdb_00009g9x