RCSB PDB: Search

1DLZ \| pdb_00001dlz	Download File View File

SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC)

Balashova, T.A., Shenkarev, Z.O., Tagaev, A.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.

(2000) FEBS Lett 466: 333

Released	2000-02-03
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

Explore in 3D

1IH9 \| pdb_00001ih9	Download File View File

NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles

Shenkarev, Z.O., Balasheva, T.A., Efremov, R.G., Yakimenko, Z.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.

(2002) Biophys J 82: 762

Released	2002-02-13
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

Explore in 3D

1IMI \| pdb_00001imi	Download File View File

SOLUTION STRUCTURE OF ALPHA-CONOTOXIN IM1

Maslennikov, I.V., Shenkarev, Z.O., Zhmak, M.N., Tsetlin, V.I., Ivanov, V.T., Arseniev, A.S.

(1999) FEBS Lett 444: 275-280

Released	1999-04-23
Method	SOLUTION NMR
Organisms	Conus imperialis
Macromolecule	PROTEIN (ALPHA-CONOTOXIN IMI) (protein)

Explore in 3D

1R9U \| pdb_00001r9u	Download File View File

Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings

Shenkarev, Z.O., Balashova, T.A., Yakimenko, Z.A., Ovchinnikova, T.V., Arseniev, A.S.

(2003) J Pept Sci 9: 817-826

Released	2004-11-09
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

Explore in 3D

1ZNU \| pdb_00001znu	Download File View File

Structure of cyclotide Kalata B1 in DPC micelles solution

Shenkarev, Z.O., Nadezhdin, K.D., Sobol, V.A., Sobol, A.G., Skjeldal, L., Arseniev, A.S.

(2006) FEBS J 273: 2658-2672

Released	2006-04-25
Method	SOLUTION NMR
Organisms	Oldenlandia affinis
Macromolecule	Kalata B1 (protein)

Explore in 3D

2JNI \| pdb_00002jni	Download File View File

Spatial structure of antimicrobial peptide arenicin-2 in aqueous solution

Ovchinnikova, T.V., Shenkarev, Z.O., Nadezhdin, K.D., Balandin, S.V., Zhmak, M.N., Kudelina, I.A., Finkina, E.I., Kokryakov, V.N., Arseniev, A.S.

(2007) Biochem Biophys Res Commun 360: 156-162

Released	2007-08-07
Method	SOLUTION NMR
Organisms	Arenicola marina
Macromolecule	Arenicin-2 (protein)

Explore in 3D

2JWM \| pdb_00002jwm	Download File View File

NMR spatial srtucture of ternary complex kalata B7/Mn2+/DPC micelle

Nadezhdin, K.D., Shenkarev, Z.O., Skjeldal, L., Arseniev, A.S.

(2008) J Inorg Biochem 102: 1246-1256

Released	2008-03-11
Method	SOLUTION NMR
Organisms	Oldenlandia affinis
Macromolecule	Kalata-B7 (protein)

Explore in 3D

2KTO \| pdb_00002kto	Download File View File

Spatial structure of Lch-beta peptide from two-component lantibiotic Lichenicidin VK21

Mineev, K.S., Shenkarev, Z.O., Ovchinnikova, T.V., Arseniev, A.S.

(2010) Biochemistry 49: 6462

Released	2010-07-21
Method	SOLUTION NMR
Organisms	Bacillus licheniformis DSM 13 = ATCC 14580
Macromolecule	LCHB (protein)

Explore in 3D

2L03 \| pdb_00002l03	Download File View File

Spatial structure of water-soluble Lynx1

Mineev, K.S., Shenkarev, Z.O., Arseniev, A.S.

(2011) J Biological Chem 286: 10618-10627

Released	2011-01-19
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ly-6/neurotoxin-like protein 1 (protein)

Explore in 3D

2L8X \| pdb_00002l8x	Download File View File

Spatial structure of antimicrobial peptide Arenicin-2 dimer in DPC micelles

Shenkarev, Z.O., Trunov, K.I., Paramonov, A.S., Arseniev, A.S.

(2011) Biochemistry 50: 6255-6265

Released	2011-12-14
Method	SOLUTION NMR
Organisms	Arenicola marina
Macromolecule	Arenicin-2 (protein)

Explore in 3D

2M1F \| pdb_00002m1f	Download File View File

NMR Structure of Antiamoebin I (peptaibol antibiotic) bound to DMPC/DHPC bicelles

Shenkarev, Z.O., Paramonov, A.S., Gizatullina, A.K.

(2013) Chem Biodivers 10: 838-863

Released	2012-12-12
Method	SOLUTION NMR
Organisms	Emericellopsis minima
Macromolecule	Antiamoebin I (protein)

Explore in 3D

2MAL \| pdb_00002mal	Download File View File

Solution structure of Lipid Transfer Protein from Lentil Lens Culinaris

Gizatullina, A.K., Mineev, K.S., Shenkarev, Z.O.

(2013) Biochem Biophys Res Commun 439: 427-432

Released	2013-10-02
Method	SOLUTION NMR
Organisms	Lens culinaris
Macromolecule	Non-specific lipid-transfer protein 2 (protein)

Explore in 3D

2MJ0 \| pdb_00002mj0	Download File View File

Spatial structure of P33A mutant of non-conventional toxin WTX from Naja kaouthia

Paramonov, A.S., Shenkarev, Z.O., Lyukmanova, E.N.

To be published

Released	2014-12-24
Method	SOLUTION NMR
Organisms	Naja kaouthia
Macromolecule	Weak tryptophan-containing neurotoxin (protein)

Explore in 3D

2MQU \| pdb_00002mqu	Download File View File

Spatial structure of Hm-3, a membrane-active spider toxin affecting sodium channels

Myshkin, M.Y., Shenkarev, Z.O., Paramonov, A.S., Berkut, A.A., Grishin, E.V., Vassilevski, A.A.

(2015) J Biological Chem 290: 492-504

Released	2014-11-05
Method	SOLUTION NMR
Organisms	Heriaeus mellotteei
Macromolecule	Neurotoxin Hm-3 (protein)

Explore in 3D

2N81 \| pdb_00002n81	Download File View File

Solution Structure of Lipid Transfer Protein From Pea Pisum Sativum

Paramonov, A.S., Rumynskiy, E.I., Bogdanov, I.V., Finkina, E.I., Melnikova, D.N., Ovchinnikova, T.V., Shenkarev, Z.O., Arseniev, A.S.

Bmc Plant Biol 16: 107-107

Released	2016-05-11
Method	SOLUTION NMR
Organisms	Pisum sativum
Macromolecule	Lipid Transfer Protein (protein)

Explore in 3D

2N99 \| pdb_00002n99	Download File View File

Solution structure of the SLURP-2, a secreted isoform of Lynx1

Paramonov, A.S., Shenkarev, Z.O., Lyukmanova, E.N., Arseniev, A.S.

(2016) Sci Rep 6: 30698-30698

Released	2016-09-21
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ly-6/neurotoxin-like protein 1 (protein)

Explore in 3D

5LQV \| pdb_00005lqv	Download File View File

Spatial structure of the lentil lipid transfer protein in complex with anionic lysolipid LPPG

Mineev, K.S., Shenkarev, Z.O., Arseniev, A.S., Melnikova, D.N., Finkina, E.I., Ovchinnikova, T.V.

(2017) Biochemistry 56: 1785-1796

Released	2017-06-28
Method	SOLUTION NMR
Organisms	Lens culinaris
Macromolecule	Non-specific lipid-transfer protein 2 (protein)
Unique Ligands	PGM

Explore in 3D

5M9U \| pdb_00005m9u	Download File View File

Spatial structure of antimicrobial peptide arenicin-1 mutant V8R

Myshkin, M.Y., Shenkarev, Z.O., Panteleev, P.V., Ovchinnikova, T.V.

(2017) Biochem Biophys Res Commun 482: 1320-1326

Released	2017-07-26
Method	SOLUTION NMR
Organisms	Arenicola marina
Macromolecule	Arenicin-1 (protein)

Explore in 3D

6HN9 \| pdb_00006hn9	Download File View File

Nicomicin-1 -- Novel antimicrobial peptides from the Arctic polychaeta Nicomache minor provide new molecular insight into biological role of the BRICHOS domain

Panteleev, P.V., Tsarev, A.V., Bolosov, I.A., Paramonov, A.S., Marggraf, M.B., Sychev, S.V., Shenkarev, Z.O., Ovchinnikova, T.V.

(2018) Mar Drugs 16:

Released	2018-11-07
Method	SOLUTION NMR
Organisms	Nicomache minor
Macromolecule	Nicomicin-1 (protein)

Explore in 3D

6IB6 \| pdb_00006ib6	Download File View File

Solution structure of the water-soluble LU-domain of human Lypd6 protein

Tsarev, A.V., Kulbatskii, D.S., Paramonov, A.S., Lyukmanova, E.N., Shenkarev, Z.O.

(2020) Int J Mol Sci 21:

Released	2019-12-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ly6/PLAUR domain-containing protein 6 (protein)

Explore in 3D

6ZSO \| pdb_00006zso	Download File View File

Solution structure of the water-soluble LU-domain of human Lypd6b protein

Tsarev, A.V., Kulbatskii, D.S., Paramonov, A.S., Lyukmanova, E.N., Shenkarev, Z.O.

(2020) Int J Mol Sci 21:

Released	2021-01-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ly6/PLAUR domain-containing protein 6B (protein)

Explore in 3D

6ZSS \| pdb_00006zss	Download File View File

NMR structure of water-soluble domain of human Lynx2 (Lypd1) protein

Kocharovskaya, M.V., Paramonov, A.S., Lyukmanova, E.N., Shenkarev, Z.O.

(2020) Int J Mol Sci 21:

Released	2021-01-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ly6/PLAUR domain-containing protein 1 (protein)

Explore in 3D

6ZZE \| pdb_00006zze	Download File View File

Structure of the trans-(Tyr39-Pro40) form of the Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1)

Paramonov, A.S., Lyukmanova, E.N., Shenkarev, Z.O.

(2020) Int J Mol Sci 21:

Released	2021-01-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Secreted Ly-6/uPAR-related protein 1 (protein)

Explore in 3D

6ZZF \| pdb_00006zzf	Download File View File

Structure of the cis-(Tyr39-Pro40) form of the Human Secreted Ly-6/uPAR Related Protein-1 (SLURP-1)

Paramonov, A.S., Lyukmanova, E.N., Shenkarev, Z.O.

(2020) Int J Mol Sci 21:

Released	2021-01-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Secreted Ly-6/uPAR-related protein 1 (protein)

Explore in 3D

7ACB \| pdb_00007acb	Download File View File

Covalent/noncovalent tetramer of Capra hircus Cathelicidin-1 in DPC (dodecylphosphocholine) micelles

Myshkin, M.Y., Mironov, P., Shenkarev, Z.O.

(2021) Front Microbiol 12: 2249

Released	2021-09-15
Method	SOLUTION NMR
Organisms	Capra hircus
Macromolecule	Capra hircus Cathelicidin-1 (dodecylphosphocholine) (protein)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DLZ | pdb_00001dlz

1IH9 | pdb_00001ih9

1IMI | pdb_00001imi

1R9U | pdb_00001r9u

1ZNU | pdb_00001znu

2JNI | pdb_00002jni

2JWM | pdb_00002jwm

2KTO | pdb_00002kto

2L03 | pdb_00002l03

2L8X | pdb_00002l8x

2M1F | pdb_00002m1f

2MAL | pdb_00002mal

2MJ0 | pdb_00002mj0

2MQU | pdb_00002mqu

2N81 | pdb_00002n81

2N99 | pdb_00002n99

5LQV | pdb_00005lqv

5M9U | pdb_00005m9u

6HN9 | pdb_00006hn9

6IB6 | pdb_00006ib6

6ZSO | pdb_00006zso

6ZSS | pdb_00006zss

6ZZE | pdb_00006zze

6ZZF | pdb_00006zzf

7ACB | pdb_00007acb